mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 34.6% | 93.1 / 74.0 | 81 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,270,030 | 0 | T | C | 23.5% | 62.4 / 17.8 | 35 | intergenic (+428/+186) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| * | NC_000913 | 380,013 | 0 | G | . | 21.7% | 59.2 / 14.1 | 24 | intergenic (‑132/+56) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| Marginal new junction evidence (lowest skew 10 of 25 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1411899 = | 110 (1.140) | 19 (0.240) | 13/224 | 5.3 | 17.3% | coding (50/936 nt) | ttcA | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| ? | NC_000913 | = 1434958 | 92 (1.180) | pseudogene (51/51 nt) | ttcC | pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4168341 | 48 (0.500) | 6 (0.070) | 6/256 | 8.6 | 13.4% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 33 (0.370) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2729443 = | 40 (0.410) | 6 (0.070) | 6/256 | 8.6 | 12.6% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | = 4168331 | 46 (0.510) | intergenic (+131/‑41) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | = 260267 | 106 (1.110) | 12 (0.130) | 7/274 | 8.6 | 10.2% | intergenic (‑167/‑121) | phoE/proB | outer membrane phosphoporin protein E/gamma‑glutamate kinase |
| ? | NC_000913 | 273955 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 2729475 = | 56 (0.580) | 5 (0.060) | 5/256 | 9.1 | 10.5% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 33 (0.370) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2729443 = | 40 (0.410) | 5 (0.060) | 5/256 | 9.1 | 10.4% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | 2729485 = | 49 (0.550) | intergenic (‑41/+131) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 4542682 = | 144 (1.490) | 5 (0.060) | 5/258 | 9.2 | 3.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 173 (1.920) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 1893763 | 120 (1.240) | 5 (0.050) | 5/262 | 9.3 | 4.2% | intergenic (+52/‑370) | yoaB/yoaC | putative reactive intermediate deaminase/DUF1889 family protein |
| ? | NC_000913 | = 1893776 | 117 (1.280) | intergenic (+65/‑357) | yoaB/yoaC | putative reactive intermediate deaminase/DUF1889 family protein | |||||
| * | ? | NC_000913 | 2477002 = | 96 (0.990) | 4 (0.050) | 4/252 | 9.6 | 4.1% | coding (628/936 nt) | dsdC | dsd operon activator; autorepressor |
| ? | NC_000913 | 2477035 = | 101 (1.150) | coding (595/936 nt) | dsdC | dsd operon activator; autorepressor | |||||
| * | ? | NC_000913 | = 3852131 | 141 (1.460) | 4 (0.040) | 4/258 | 9.7 | 2.7% | coding (654/1689 nt) | ilvB | acetolactate synthase 2 large subunit |
| ? | NC_000913 | = 3852204 | 155 (1.720) | coding (581/1689 nt) | ilvB | acetolactate synthase 2 large subunit | |||||