New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3442513	45 (1.310)	4 (0.120)	4/242	3.9	8.6%	intergenic (‑42/+105)	rpsM/rpmJ	30S ribosomal subunit protein S13/50S ribosomal subunit protein L36
	?	NC_000913	= 3442518	42 (1.300)					intergenic (‑47/+100)	rpsM/rpmJ	30S ribosomal subunit protein S13/50S ribosomal subunit protein L36
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGCTTTAGAACGGGTCTTGCCGACGCCATAAATCGAAGTTAATGCGATTACGGCATGCTTATGATCAGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGCGAAAAAATCAGCCTTGGCGCTGTTTATGCTTCGGCTCGGCACTGCA  >  NC_000913/3442375‑3442656                                                                                                                                           |                                                                                                                                                tGGCTTTAGAACGGGTCTTGCCGACGCCATAAATCGAAGTTAATGCGATTACGGCATGCTTATCATCAGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGtttt                                                                                                                                        >  4:122734/1‑148 (MQ=255)   gCTTTAGAACGGGTCTTGCCGACGCCATAAATCGAAGTTAATGCGATTACGGCATGCTTATGATCAGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCa                                                                                                                                      <  1:166231/148‑1 (MQ=255)   gCTTTAGAACGGGTCTTGCCGACGCCATAAATCGAAGTTAATGCGATTACGGCATGCTTATGATCAGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCa                                                                                                                                      <  3:40160/148‑1 (MQ=255)    cTTTAGAACGGGTCTTGCCGACGCCATAAATCGAAGTTAATGCGATTACGGCATGCTTATGATCAGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAg                                                                                                                                     >  1:65842/1‑148 (MQ=255)     tttAGAACGGGTCTTGCCGACGCCATAAATCGAAGTTAATGCGATTACGGCATGCTTATGATCAGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGa                                                                                                                                   >  4:123927/1‑149 (MQ=255)        aGAACGGGTCTTGCCGACGCCATAAATCGAAGTTAATGCGATTACGGCATGCTTATGATCAGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATa                                                                                                                                 <  2:65842/148‑1 (MQ=255)        aGAACGGGTCTTGCCGACGCCATAAATCGAAGTTAATGCGATTACGGCATGCTTATGATCAGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATa                                                                                                                                 >  6:45793/1‑148 (MQ=255)                    gCCGACGCCATAAATCGAAGTTAATGCGATTACGGCATGCTTATGATCAGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGaaa                                                                                                                     <  5:45793/148‑1 (MQ=255)                            cATAAATCGAAGTTAATGCGATTACGGCATGCTTATGATCAGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAgt                                                                                                             >  8:114312/1‑147 (MQ=255)                            cATAAATCGAAGTTAATGCGATTAAGGCATGCTTATGATCAGGAATGTTAATGCCTTCTATACGGGCCACTATGAACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGa                                                                                                             >  6:127845/1‑148 (MQ=255)                                          aaagCGATTACGCCATGCTTATGAACAGGAATGATAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGTCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATtgg                                                                                              >  8:56175/4‑149 (MQ=255)                                                 ttACGGCATGCTTATGATCAGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCCTGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTggctggct                                                                                        >  6:69586/1‑148 (MQ=255)                                                 ttACGGCATGCTTATGATCAGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTggctggct                                                                                        >  6:72012/1‑148 (MQ=255)                                                          gCTTATGATCAGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGc                                                                                >  5:108223/1‑147 (MQ=255)                                                                 aTCAGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAAc                                                                       <  6:160745/149‑1 (MQ=255)                                                                  tCAGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTTGCTGGCTAATCTAGCCAGCTCAAcc                                                                      <  3:122734/149‑1 (MQ=255)                                                                   cAGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAAcc                                                                      >  4:95830/1‑148 (MQ=255)                                                                    aGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAAccc                                                                     >  1:167896/1‑148 (MQ=255)                                                                      gAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAAc                                                                  >  1:131898/1‑149 (MQ=255)                                                                         tGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACttt                                                               <  6:108223/149‑1 (MQ=255)                                                                                  cTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATtggct                                                                                            >  6:134253/1‑111 (MQ=255)                                                                                  cTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATtggct                                                                                            <  5:134253/111‑1 (MQ=255)                                                                                     cTATACGGGCCACTATGCACTCCTACTATTTTATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAat                                                    <  5:127845/148‑1 (MQ=255)                                                                                     cTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGTCATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAat                                                    <  7:114312/148‑1 (MQ=255)                                                                                        taCGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGc                                                <  5:64406/149‑1 (MQ=255)                                                                                        taCGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGc                                                <  2:167896/149‑1 (MQ=255)                                                                                           gggCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACt                                                                 >  2:95033/1‑129 (MQ=255)                                                                                           gggCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACt                                                                 <  1:95033/129‑1 (MQ=255)                                                                                                    tGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGCGAAAAAATCa                                      <  3:123927/147‑1 (MQ=255)                                                                                                        cTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGCGAAAAAATCAGCCTTg                                >  6:113028/1‑149 (MQ=255)                                                                                                           ctactaTTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGCGAAAAAATCAGCCTTGgcg                             >  8:43204/1‑149 (MQ=255)                                                                                                              ctaTTTAATATGTACGTTCCATGCTGAAAAGTCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGCGAAAAAATCAGCCTTGGCGCt                           <  7:56175/148‑1 (MQ=255)                                                                                                                aTTTAATATGTACGTTCCATTCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGCGaaaaa                                          >  1:20071/1‑131 (MQ=255)                                                                                                                aTTTAATATGTACGTTCCATTCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGCGaaaaa                                          <  2:20071/131‑1 (MQ=255)                                                                                                                 tttAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACaaaa                                                                                                    <  2:82755/72‑1 (MQ=255)                                                                                                                 tttAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACaaaa                                                                                                    >  1:82755/1‑72 (MQ=255)                                                                                                                 tttAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGCGAAAAAATCAGCCTTGGCGCTGt                         <  7:43204/147‑1 (MQ=255)                                                                                                                    aaTATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGCGAAAAAATCa                                      >  6:122367/1‑131 (MQ=255)                                                                                                                    aaTATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGCGAAAAAATCa                                      <  5:122367/131‑1 (MQ=255)                                                                                                                     atatGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGCGAAAAAATCAGCCTTGGCGCTGTTTATGc                   <  5:113028/149‑1 (MQ=255)                                                                                                                                  aTGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGCGAAAAAATCAGCCTTGGCGCTGt                         <  8:78601/130‑1 (MQ=255)                                                                                                                                  aTGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGCGAAAAAATCAGCCTTGGCGCTGt                         >  7:78601/1‑130 (MQ=255)                                                                                                                                      tGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGCGAAAAAATCAGCCTTGGCGCTGTTTa                      <  6:149861/129‑1 (MQ=255)                                                                                                                                      tGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGCGAAAAAATCAGCCTTGGCGCTGTTTa                      >  5:149861/1‑129 (MQ=255)                                                                                                                                       gAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGCGAAAAAATCAGCCTTGGCGCTGTTTATGCTTCGGCTCGGCACTGCa  >  6:85425/1‑148 (MQ=255)                                                                                                                                           |                                                                                                                                                TGGCTTTAGAACGGGTCTTGCCGACGCCATAAATCGAAGTTAATGCGATTACGGCATGCTTATGATCAGGAATGTTAATGCCTGCTATACGGGCCACTATGCACTCCTACTATTTAATATGTACGTTCCATGCTGAAAAGCCCGTTTTCAGGATACTCAAATGGAAACGCACAGACATACAAAAGATTGGCTGGCTAATCTAGCCAGCTCAACCCAACTTTGCAAGAAAAATATGCGAAAAAATCAGCCTTGGCGCTGTTTATGCTTCGGCTCGGCACTGCA  >  NC_000913/3442375‑3442656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.