BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	2411159 =	256 (1.050)	4 (0.020)	4/232	NT	1.7%	coding (635/924 nt)	spoIIIAA	stage III sporulation protein AA
*	?	NZ_CP034943	= 2411155	241 (1.080)	4 (0.020)	4/232	NT	1.7%	coding (639/924 nt)	spoIIIAA	stage III sporulation protein AA
Rejected: Frequency below/above cutoff threshold.

Only 100 of 282 total aligned reads displayed.

CATCAGGTCGGATATGCTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACGGGCAATATG  >  NZ_CP034943/2411020‑2411296

cttcatcaggtcggatatgctccagccatgcgccgagacgataactgaaacacctgcatgcagcgcctcaagaagtgcatctgtatcttccacacgcccgatttcatcgacaatgatcacctcagggctcatggatcgaa                                                                                                                                           >  2:443819‑M1/140‑140 (MQ=255)

 atcatcaggtcggatatgctaaataaatgagcctagacgataactgaaaaacctgcatgcagcgcaacaagaactgcatctgtatcttccacacgcccgatttcatcgacaatgatcacctcagggctcatggatcgaat                                                                                                                                          <  2:1120658‑M1/2‑1 (MQ=255)

    atcaggtcggatatgctccagccatgcgccgagacgataactgaaacacctgcatgcagcgcctcaagaagtgcatctgtatcttccacacgcccgatttcatcgacaatgatcacctcagggctcatggatcgaatcat                                                                                                                                       >  2:3613161‑M1/136‑140 (MQ=255)

     tcaggtcggatatgctccagccatgcgccgagacgataactgaaacacctgcatgcagcgcctcaagaagtgcatctgtatcttccacacgcccgatttcatcgacaatgatcacctcagggctcatggatcgaatcatc                                                                                                                                      >  1:3637770‑M1/135‑140 (MQ=255)

        cGGATATGCTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAatcatcatcatc                                                                                                                                   >  1:389142/1‑140 (MQ=255)

        cGGATATGCTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAatcatcatcatc                                                                                                                                   <  1:944325/140‑1 (MQ=255)

        cGGATATGCTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAatcatcatcatc                                                                                                                                   >  2:3188254/1‑140 (MQ=255)

         gtcggatatgctccagccatgcgccgagacgataactgaaacacctgcatgcagcgcctcaagaagtgcatctgtatcttccacacgcccgatttcatcgacaatgatcacctcagggctcatggatcgaAtcatcatca                                                                                                                                  <  1:1975857‑M1/10‑1 (MQ=255)

           atatGCTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGc                                                                                                                                >  2:4001909/1‑140 (MQ=255)

                cTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTc                                                                                                                           <  1:358991/140‑1 (MQ=255)

                cTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTc                                                                                                                           <  2:3930451/140‑1 (MQ=255)

                cTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTc                                                                                                                           >  2:2727518/1‑140 (MQ=255)

                cTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTc                                                                                                                           <  1:1992084/140‑1 (MQ=255)

                cTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTc                                                                                                                           <  2:2442848/140‑1 (MQ=255)

                cTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTc                                                                                                                           >  2:1961417/1‑140 (MQ=255)

                     gCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCt                                                                                                                      >  2:2497700/1‑140 (MQ=255)

                     gCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCt                                                                                                                      >  1:30990/1‑140 (MQ=255)

                          gcgcCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACACTGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGa                                                                                                                 <  2:1630835/140‑1 (MQ=255)

                           cgcCGAGACTATAACTGAAACACATGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGTTTTAATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGAc                                                                                                                >  1:100435/1‑140 (MQ=255)

                           cgcCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGAc                                                                                                                >  2:3004299/1‑140 (MQ=255)

                            gcCGAGACGATAACTGAACCACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACa                                                                                                               <  2:2598705/140‑1 (MQ=255)

                            gcCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACa                                                                                                               <  2:484889/140‑1 (MQ=255)

                             ccGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCCGCCCCTCAGCCTTTGGACAg                                                                                                              <  2:2915677/140‑1 (MQ=255)

                             ccGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAg                                                                                                              <  2:3657589/140‑1 (MQ=255)

                               gagaCGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGc                                                                                                            <  2:2361496/140‑1 (MQ=255)

                               gagaCGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGc                                                                                                            <  2:403478/140‑1 (MQ=255)

                                agaCGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCg                                                                                                           >  2:2149745/1‑140 (MQ=255)

                                      tAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAAt                                                                                                     >  1:3258691/1‑140 (MQ=255)

                                       aaCTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATa                                                                                                    <  1:3131277/140‑1 (MQ=255)

                                       aaCTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATa                                                                                                    <  1:447811/140‑1 (MQ=255)

                                       aaCTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATa                                                                                                    <  1:1201510/140‑1 (MQ=255)

                                       aaCTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATa                                                                                                    <  2:1591489/140‑1 (MQ=255)

                                       aaCTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATa                                                                                                    <  2:3484033/140‑1 (MQ=255)

                                       aaCTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCCGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCAACAGCCCCTCAGCCTTTGGACAGGCGTCTAATa                                                                                                    <  1:782192/140‑1 (MQ=255)

                                              acacCTGCATGCAGCGCCTCAAGAAGTGCATCTGTAGCTTCCACACGCCCGATTTCATCGACAATGAGCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAAt                                                                                             >  1:1800586/1‑140 (MQ=255)

                                                 ccTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCct                                                                                          <  1:1116780/140‑1 (MQ=255)

                                                 ccTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCct                                                                                          <  1:2997994/140‑1 (MQ=255)

                                                  cTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCctc                                                                                         >  1:2179663/1‑140 (MQ=255)

                                                  cTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCctc                                                                                         <  2:1546874/140‑1 (MQ=255)

                                                    gcatgcaGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTaa                                                                                                      >  1:3703588/1‑125 (MQ=255)

                                                    gcatgcaGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTg                                                                                       >  2:1850215/1‑140 (MQ=255)

                                                    gcatgcaGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTg                                                                                       >  1:1519161/1‑140 (MQ=255)

                                                      atgcaGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTc                                                                                     <  1:70425/140‑1 (MQ=255)

                                                          aGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCaaa                                                                                 >  2:202323/1‑140 (MQ=255)

                                                          aGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCaaa                                                                                 >  2:1751862/1‑140 (MQ=255)

                                                          aGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCaaa                                                                                 >  2:3387355/1‑140 (MQ=255)

                                                          aGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCaaa                                                                                 >  1:3151911/1‑140 (MQ=255)

                                                                tCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCTTCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGAtg                                                                           <  1:1628710/140‑1 (MQ=255)

                                                                     aagTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCg                                                                      <  1:2782644/140‑1 (MQ=255)

                                                                        tGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGaa                                                                   >  1:3476115/1‑140 (MQ=255)

                                                                        tGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGaa                                                                   >  2:3819418/1‑140 (MQ=255)

                                                                        tGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGaa                                                                   >  1:2769524/1‑140 (MQ=255)

                                                                         gCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATa                                                                                                    >  1:2941221/1‑106 (MQ=255)

                                                                         gCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATa                                                                                                    <  2:2190416/106‑1 (MQ=255)

                                                                         gCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAAt                                                                  >  2:1108293/1‑140 (MQ=255)

                                                                         gCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAAt                                                                  <  1:2113095/140‑1 (MQ=255)

                                                                          cATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATg                                                                 >  2:3130241/1‑140 (MQ=255)

                                                                            tCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGcc                                                               >  2:1944741/1‑140 (MQ=255)

                                                                               gTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTg                                                                              <  2:2755248/122‑1 (MQ=255)

                                                                                     tCCACACGCCCGCTTTCATCGACAATGATCACCTCAGGGCTCCGGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTGTACTACGTCCAGCCTCGGTCCAACGAGCTGCTGCGGACGGCCGGGCCGGCa                                                      >  2:1379027/1‑140 (MQ=255)

                                                                                     tCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCa                                                      >  2:672925/1‑140 (MQ=255)

                                                                                      ccACACGCCCGATTTCATCGACACTGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAAGCCACTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCAt                                                     <  2:2784302/140‑1 (MQ=255)

                                                                                       cacaCTCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCATCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATc                                                    >  2:3412030/1‑140 (MQ=255)

                                                                                       cacaCGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATc                                                    >  2:3467850/1‑140 (MQ=255)

                                                                                       cacaCGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATc                                                    >  2:835943/1‑140 (MQ=255)

                                                                                          cacacgcccgatttcatcgacaatgatcacctcagggctcatggatcgaATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCgg                                                 <  2:711157‑M1/91‑1 (MQ=255)

                                                                                          acGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCgg                                                 <  2:1973144/140‑1 (MQ=255)

                                                                                            gCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCa                                               <  1:2497700/140‑1 (MQ=255)

                                                                                              ccGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCCTCCGGCAAt                                             >  2:3133999/1‑140 (MQ=255)

                                                                                              ccGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAAt                                             >  1:1866882/1‑140 (MQ=255)

                                                                                              ccGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAAt                                             >  2:2554959/1‑140 (MQ=255)

                                                                                                     cATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTGGGACAGGCGTCTAATACGTCAATCCTCGGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGAc                                      <  2:216510/140‑1 (MQ=255)

                                                                                                            aaTGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAg                                                                                                              <  1:544435/61‑1 (MQ=255)

                                                                                                               gATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTcga                            <  1:3819418/140‑1 (MQ=255)

                                                                                                                     cTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTc                      <  1:2336197/140‑1 (MQ=255)

                                                                                                                        aGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGc                                                                                                            >  1:124756/1‑51 (MQ=255)

                                                                                                                        aGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGc                                                                                                            <  2:124756/51‑1 (MQ=255)

                                                                                                                        aGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTg                   >  2:3673236/1‑140 (MQ=255)

                                                                                                                              cATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTa             <  1:2393176/140‑1 (MQ=255)

                                                                                                                              cATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTa             <  1:2729583/140‑1 (MQ=255)

                                                                                                                              cATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTa             <  1:208121/140‑1 (MQ=255)

                                                                                                                               aTGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTcga                            <  1:2280943/124‑1 (MQ=255)

                                                                                                                               aTGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTcga                            >  2:2280943/1‑124 (MQ=255)

                                                                                                                               aTGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCt                    <  2:1695471/132‑1 (MQ=255)

                                                                                                                               aTGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTAc            >  2:2628304/1‑140 (MQ=255)

                                                                                                                               aTGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTAc            >  2:3887784/1‑140 (MQ=255)

                                                                                                                               aTGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTAc            >  2:3762895/1‑140 (MQ=255)

                                                                                                                               aTGGATCGAATCATCATCATCAGCCCCTAAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCCCGCAGGCATCCGCCAATTTCTGACCGTTCGTCGACGATTCCTCTCATTAc            >  2:3239478/1‑140 (MQ=255)

                                                                                                                                  gATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAATTGGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACggg         <  2:2821497/140‑1 (MQ=255)

                                                                                                                                  gATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACggg         <  1:1902933/140‑1 (MQ=255)

                                                                                                                                  gATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACggg         <  1:2634208/140‑1 (MQ=255)

                                                                                                                                  gATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACggg         <  1:835943/140‑1 (MQ=255)

                                                                                                                                  atggatcgaATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACggg         <  1:3328101‑M1/131‑1 (MQ=255)

                                                                                                                                   aTCGAATCATCATCATCAGCGCAACAGGCTTTGGACAGTCTTCTAATACGTCAATCATCTGTCCTAATTGATGATGCGGAATGCCGCGAATGCATCCTGCAATTTCTGACCTTTCTTCGACGATTACTGTCTTTACgtga        <  2:1894749/140‑4 (MQ=255)

                                                                                                                                   aTCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACGGGc        <  2:2521343/140‑1 (MQ=255)

                                                                                                                                    tCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACGGGCa       >  2:776550/1‑140 (MQ=255)

                                                                                                                                    tCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACGGGCa       <  1:3998206/140‑1 (MQ=255)

                                                                                                                                    tCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACGGGCa       <  1:1958912/140‑1 (MQ=255)

                                                                                                                                       aaTCATCATCATCAGCCCCTCAGCCTTTGGACCGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACGGGCActa    >  2:18358/1‑140 (MQ=255)

                                                                                                                                         tcatcatcatcaGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACGGGCAATAtg  <  1:1320868/140‑1 (MQ=255)

CATCAGGTCGGATATGCTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACGGGCAATATG  >  NZ_CP034943/2411020‑2411296

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.