| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | ACB143 | 4,195,579 | Δ105,043 bp | [CJ019_03944]–[CJ019_04036] | 91 genes [CJ019_03944], CJ019_03945, CJ019_03946, CJ019_03947, CJ019_03948, CJ019_03949, CJ019_03950, CJ019_03951, CJ019_03952, CJ019_03953, CJ019_03954, CJ019_03955, CJ019_03956, CJ019_03957, CJ019_03958, CJ019_03959, CJ019_03960, CJ019_03961, CJ019_03962, CJ019_03963, CJ019_03964, CJ019_03965, CJ019_03966, CJ019_03967, CJ019_03968, catA_2, catC, catB, benM_3, CJ019_03973, spuC_4, spuD_3, kefF, aruH, alr, aruI_2, FCS1, acdA_1, CJ019_03982, rocE, rcsC_13, CJ019_03985, arcA_2, betI_2, CJ019_03988, CJ019_03989, CJ019_03990, CJ019_03991, CJ019_03994, nicP_10, pcaK_3, mrdA_1, CJ019_03998, CJ019_03999, glcC, CJ019_04001, CJ019_04002, lutA, CJ019_04004, CJ019_04005, gabR_1, yycB_2, CJ019_04008, CJ019_04009, bktB, hbd, fabR_1, cpdR, rcsC_14, cheB_3, cheR, rcsC_15, cckA_1, CJ019_04019, nicP_11, CJ019_04021, gloA, CJ019_04023, sdhL, CJ019_04025, CJ019_04026, CJ019_04027, CJ019_04028, CJ019_04029, CJ019_04030, soxA_2, rarD_3, prmC_3, proC_1, CJ019_04035, [CJ019_04036] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | ACB143 | 4195579 | 4300621 | 105043 | 49 [0] | [0] 49 | [CJ019_03944]–[CJ019_04036] | [CJ019_03944],CJ019_03945,CJ019_03946,CJ019_03947,CJ019_03948,CJ019_03949,CJ019_03950,CJ019_03951,CJ019_03952,CJ019_03953,CJ019_03954,CJ019_03955,CJ019_03956,CJ019_03957,CJ019_03958,CJ019_03959,CJ019_03960,CJ019_03961,CJ019_03962,CJ019_03963,CJ019_03964,CJ019_03965,CJ019_03966,CJ019_03967,CJ019_03968,catA_2,catC,catB,benM_3,CJ019_03973,spuC_4,spuD_3,kefF,aruH,alr,aruI_2,FCS1,acdA_1,CJ019_03982,rocE,rcsC_13,CJ019_03985,arcA_2,betI_2,CJ019_03988,CJ019_03989,CJ019_03990,CJ019_03991,CJ019_03994,nicP_10,pcaK_3,mrdA_1,CJ019_03998,CJ019_03999,glcC,CJ019_04001,CJ019_04002,lutA,CJ019_04004,CJ019_04005,gabR_1,yycB_2,CJ019_04008,CJ019_04009,bktB,hbd,fabR_1,cpdR,rcsC_14,cheB_3,cheR,rcsC_15,cckA_1,CJ019_04019,nicP_11,CJ019_04021,gloA,CJ019_04023,sdhL,CJ019_04025,CJ019_04026,CJ019_04027,CJ019_04028,CJ019_04029,CJ019_04030,soxA_2,rarD_3,prmC_3,proC_1,CJ019_04035,[CJ019_04036] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | = 4195578 | 0 (0.000) | 49 (0.840) | 28/254 | 0.6 | 100% | coding (5826/6624 nt) | CJ019_03944 | hypothetical protein |
| ? | ACB143 | 4300622 = | 0 (0.000) | coding (440/1425 nt) | CJ019_04036 | hypothetical protein | |||||
CATCAGCCATCGCTGCATCGACCTTCAGGCGCTCCGCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > ACB143/4195442‑4195578‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGCGAGCCCGGCAACGCTGACCACATCGAAACTGAAACTGCTCCGCGCTCGCGTCAATCG > ACB143/4300622‑4300751 CATCAGCCATCGCTGCATCGACCTTCAGGCGCTCCGCTTCATGCGCAGCATCGATAACCTCTTGCTTGGCTCTCTACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTACGCCTTCACTACGGCATCAA > 3:239792/1‑135 AGCCATCGCTGCATCGACCTTCAGGCGCTCCGCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTG > 4:157700/1‑135 AGCCATCGCTGCATCGACCTTCAGGCGCTCCGCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTG > 5:217188/1‑135 AGCCATCGCTGCATCGACCTTCAGGCGCTCCGCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTG > 3:242820/1‑135 AGCCATCGCTGCATCGACCTTCAGGCGCTCCGCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCT > 6:15732/1‑134 CCATCGCTGCATCGACCTTCAGGCGCTCCGCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCT > 2:69607/1‑135 TCGCTGCATCGACCTTCAGGCGCTCCGCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGC > 7:114297/1‑135 TGCATCGACCTTCAGGCGCTCCGCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCAGCAACCTGCTCGCGGCT > 2:142436/1‑135 TTCAGGCGCTCCGCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATG > 4:237619/1‑135 TTCAGGCGCTCCGCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATG > 3:318458/1‑135 TTCAGGCGCTCCGCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATG < 3:237619/135‑1 TTCAGGCGCTCCGCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCAGCTTTCGTCGATG > 1:170507/1‑135 GCTCCGCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTT < 3:197366/135‑1 GCTCCGCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTT < 4:160634/135‑1 CGCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGACTTTCGTCGATGGCGCCTTGCAA > 6:156304/1‑135 CGCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCATACGGCATCAACCTGCTCGCGGCTTTAGTCGATGGCGCCTTGCAA > 6:338495/1‑135 GCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAAC > 2:2056/1‑135 CTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAAC > 3:77391/1‑134 TGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTC < 4:305347/135‑1 gctCAGCATCGATCACCGCTTGCTTGGCGCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTAAGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCG < 3:283/132‑1 CAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACT > 4:279584/1‑135 CTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGT < 2:304184/135‑1 CTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGT < 2:183974/135‑1 TTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTG > 7:148564/1‑135 TTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTAGATGGCGCCTTGCAACTCAGTCGAATTGCCGACAATCCGGTG > 1:57572/1‑135 GCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGA > 1:214860/1‑134 GCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGATTTCGTCGATGCCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGA > 2:280014/1‑134 GCTTGGCTCTCGACTCAGAGAGAAGCTCAGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGA > 2:90336/1‑134 GCTTGGCTCTCGACTCAGAGAGAAGCTCAGTCAAATGATGATGAACCTTTTCCGCCGTCCATACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCTACTTGCCGACAATCCGGTGA > 2:19811/1‑134 GCTTAGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGA > 3:43874/1‑134 TTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCA > 7:31334/1‑135 CTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCT > 2:253998/1‑133 CTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCT > 6:156646/1‑133 ACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGC < 4:219298/135‑1 ACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGC < 2:243553/135‑1 AAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGCGAGCCCGGCA < 1:39517/135‑1 tCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGCGAGCCCGGCAAC < 8:245197/134‑1 GCTCCTTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCTCCTTTCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGATGCGAGCCCGGCAAC < 8:116696/135‑1 TCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGCGAGCCCGGCAACGC > 8:123288/1‑135 AATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGCGAGCCCGGCAACGCTGACCAC < 2:241693/135‑1 AATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGCGAGCCCGGCAACGCTGACCAC < 6:217188/135‑1 TGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGCGAGCCCGGCAACGCTGACCACTTCGA < 1:90336/135‑1 TGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGCGAGCCCGGCAACGCTGACCACATCGA < 8:328270/135‑1 TGATGAACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGCGAGCCCGGCAACGCTGACCACATCGA < 1:225110/135‑1 ACCTTTTCCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGCGAGCCCGGCAACGCTGACCACATCGAAACTG < 3:355286/134‑1 CCGCCGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGCGAGCCCGGCAACGCTGACCACATCGACACTGAAACTGCT > 4:308282/1‑135 CGTCCCTACGGCATCAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGCGAGCCCGGCAACGCTGACCACATCGAAACTGAAACTGCTCCGC < 6:210063/135‑1 CAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGCGAGCCCGGCAACGCTGACCACATCGAAACTGAAACTGCTCCGCGCTCGCGTCAATCG < 7:244163/135‑1 CAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGCGAGCCCGGCAACGCTGACCACATCGAAACTGAAACTGCTCCGCGCTCGCGTCAATCG < 3:92986/135‑1 CAACCTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGCGAGCCCGGCAACGCTGACCACATCGAAACTGAAACTGCTCCGCGCTCGCGTCAATCG < 5:23451/135‑1 CATCAGCCATCGCTGCATCGACCTTCAGGCGCTCCGCTTCATGCGCAGCATCGATAACCGCTTGCTTGGCTCTCGACTCAGAGAGAAGCTCCGTCAAATGCTGATGAACCTTTTCCGCCGTCCCTACGGCATCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > ACB143/4195442‑4195578‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accTGCTCGCGGCTTTCGTCGATGGCGCCTTGCAACGCAGTCGACTTGCCGACAATCCGGTGATCACGCTGGAGGCGAGCCCGGCAACGCTGACCACATCGAAACTGAAACTGCTCCGCGCTCGCGTCAATCG > ACB143/4300622‑4300751 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |