New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1381501	16 (0.790)	3 (0.160)	3/260	NT	14.6%	coding (525/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase
	?	CP009273	= 1381567	20 (1.040)					coding (591/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase

ATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCG  >  CP009273/1381357‑1381648                                                                                                                                                 |                                                                                                                                                    aTTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACcg                                                                                                                                                 <  2:283466/149‑1 (MQ=255)   tGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGCTGAAAATGATCAACACGTCCTGACcggt                                                                                                                                               >  2:270085/1‑149 (MQ=255)                tAATTTCTTTAGTTGGCTGGAAAGCGAAGTGGAAGGTTCGTATAACGAGCATGTCGTTATTAATGGGCAGAATTTCTTGATGGAGCTTACGCCTGTTTATGTTCAGGATGAAAATGATAAACACGTAGTTGACGGTGCGGTGGTGATGt                                                                                                                                  >  1:237688/1‑149 (MQ=255)                tAACTTTTTACGTTGGCTGGAAAGCGAACCGCGAGCTTCGCATAACGAGCATGTCTTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATTAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGt                                                                                                                                  <  2:132873/149‑1 (MQ=255)                                             cGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAg                                                                                                     >  2:192956/1‑149 (MQ=255)                                                   aTTCGCATAACGAGCATGTCGTAATTAATGGGCAGAATTTCCTGATGGAGATTACGCGTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGACCAACGATTCGTAGGGGCCGCCAGTTGCaa                                                                                               <  2:226366/149‑1 (MQ=255)                                                        cATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGggcggcgacattttgcaactggcggcccatacgaatcgttgatcgcaacatccccaccg                                                                                          >  1:282314‑M1/1‑90 (MQ=255)                                                                 cATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCca                                                                                 <  1:27856‑M2/149‑3 (MQ=255)                                                                   tGTCGTTATTAATGGGCAGTATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCcagg                                                                               >  1:81214‑M2/1‑145 (MQ=255)                                                                     tCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCCGTTGCAAAATGTCGCCGCCcaggac                                                                             <  1:30457‑M2/149‑7 (MQ=255)                                                                     tCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGAGATGTTGCGAACAACGATTCGTCTGGGCCGCCGGTTGCAAAATGTCGCCGCCcaggac                                                                             <  1:311771‑M2/149‑7 (MQ=255)                                                                        ttattaATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGggcggcgacattttgcaactggcggcccatacgaatcgttgatcgcaacatcaccaccgcaccggtcaggacgtg                                                                          <  2:139443‑M1/149‑76 (MQ=255)                                                                        ttattaATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTAGGGGCCGCCGGTTGCAAAATGTCACCGCCcaggacagc                                                                          <  1:38959‑M2/149‑10 (MQ=255)                                                                          attaATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCAAGTTGCAAAATGTCGCCGCCCAGGACGTCAg                                                                        >  1:56178/1‑149 (MQ=255)                                                                            taATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGggcggcgacattttgcaactggcggcccatacgaatcgttgatcgcaacatcaccaccgcaccggtcaggacgtgttga                                                                      <  2:282314‑M1/149‑80 (MQ=255)                                                                                   cAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAg                                                               >  2:124229/1‑149 (MQ=255)                                                                                       aTTTCTTGCTGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGTGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCTTTCAGTCaa                                                           <  1:126202/149‑1 (MQ=255)                                                                                             ggATGGATATTACGCCTCTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTc                                                     <  1:330500/148‑1 (MQ=255)                                                                                                tGGAGATTACGCCTGCTTATCTGCAGGATGAAAATGATCCACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGcc                                                  <  2:125992/149‑1 (MQ=255)                                                                                                        aCGCCTGTTTATCTTCAGGATGAAAATGATCACCACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGccc                                          <  2:199784/149‑1 (MQ=255)                                                                                                            cTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGaaa                                      >  2:60072/1‑149 (MQ=255)                                                                                                              gTTGATCTTCAGGATGAAAATGATCAACACGTCCTGACCTGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGTGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGTCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAAt                                    <  1:23075/149‑1 (MQ=255)                                                                                                               tttATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCCCCGCCCAGGACGTCCGCGCCTTCAGTCAAATTATCGCCCTCAGCCCCAACATg                                   >  1:161003/1‑149 (MQ=255)                                                                                                                  gtCTTCAGGGTGAAAAAGTTCACCTCGGCCGGACCGGTGCGGTGGTGGCGTCGAGGTCAACGACCCGTATGGGCCGCCAGTTGCAAAAAGTCGCCGCCCAGGACGACAGCGCCTTCAGTCAAATTGGCGCCGTCAGCCCGAAGATGAAg                                <  1:103411/148‑1 (MQ=255)                                                                                                                                     tCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccatta             <  2:282314‑M2/149‑71 (MQ=255)                                                                                                                                         gctgtccTGggcggtgacattttgcaaccggcggcccctacgaatcgttgatcgcaacatcaccaccgcaccggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccattaataa         <  1:38959‑M1/146‑141 (MQ=255)                                                                                                                                         cacGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccattaataa         <  2:139443‑M2/149‑75 (MQ=255)                                                                                                                                           cGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGCAAc       >  1:101890/1‑149 (MQ=255)                                                                                                                                            gTCCTGggcggcgacattttgcaacgggcggcccatacgaatcgttgatcgcaacatcaccaccgcaccggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccattaataacga      <  1:30457‑M1/149‑144 (MQ=255)                                                                                                                                            gTCCTGggcggcgacattttgcaaccggcggcccagacgaatcgttgttcgcaacatctccaccgcaccggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccattaataacga      <  1:311771‑M1/149‑144 (MQ=255)                                                                                                                                              ccTGggcggcgacattttgcaactggcggcccatacgaatcgttgatcgcaacatcaccaccgcaccggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaatactgcccattaataacgaca    >  1:81214‑M1/1‑4 (MQ=255)                                                                                                                                                tGggcggcgacattttgcaactggcggcccatacgaatcgttgatcgcaacatcaccaccgcaccggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccattaataacgacatg  <  1:27856‑M1/149‑148 (MQ=255)                                                                                                                                                 |                                                                                                                                                    ATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCG  >  CP009273/1381357‑1381648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.