New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1381501	16 (0.790)	3 (0.160)	3/260	NT	14.6%	coding (525/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase
	?	CP009273	= 1381567	20 (1.040)					coding (591/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase

CATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACACAGGTACAGGTAAA  >  CP009273/1381421‑1381696                                                                                                                                                   |                                                                                                                                  cATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCca                                                                                                                                 <  1:27856‑M2/149‑3 (MQ=255)   tGTCGTTATTAATGGGCAGTATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCcagg                                                                                                                               >  1:81214‑M2/1‑145 (MQ=255)     tCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCCGTTGCAAAATGTCGCCGCCcaggac                                                                                                                             <  1:30457‑M2/149‑7 (MQ=255)     tCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGAGATGTTGCGAACAACGATTCGTCTGGGCCGCCGGTTGCAAAATGTCGCCGCCcaggac                                                                                                                             <  1:311771‑M2/149‑7 (MQ=255)        ttattaATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTAGGGGCCGCCGGTTGCAAAATGTCACCGCCcaggacagc                                                                                                                          <  1:38959‑M2/149‑10 (MQ=255)          attaATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCAAGTTGCAAAATGTCGCCGCCCAGGACGTCAg                                                                                                                        >  1:56178/1‑149 (MQ=255)                   cAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAg                                                                                                               >  2:124229/1‑149 (MQ=255)                       aTTTCTTGCTGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGTGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCTTTCAGTCaa                                                                                                           <  1:126202/149‑1 (MQ=255)                             ggATGGATATTACGCCTCTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTc                                                                                                     <  1:330500/148‑1 (MQ=255)                                tGGAGATTACGCCTGCTTATCTGCAGGATGAAAATGATCCACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGcc                                                                                                  <  2:125992/149‑1 (MQ=255)                                        aCGCCTGTTTATCTTCAGGATGAAAATGATCACCACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGccc                                                                                          <  2:199784/149‑1 (MQ=255)                                            cTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGaaa                                                                                      >  2:60072/1‑149 (MQ=255)                                              gTTGATCTTCAGGATGAAAATGATCAACACGTCCTGACCTGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGTGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGTCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAAt                                                                                    <  1:23075/149‑1 (MQ=255)                                               tttATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCCCCGCCCAGGACGTCCGCGCCTTCAGTCAAATTATCGCCCTCAGCCCCAACATg                                                                                   >  1:161003/1‑149 (MQ=255)                                                  gtCTTCAGGGTGAAAAAGTTCACCTCGGCCGGACCGGTGCGGTGGTGGCGTCGAGGTCAACGACCCGTATGGGCCGCCAGTTGCAAAAAGTCGCCGCCCAGGACGACAGCGCCTTCAGTCAAATTGGCGCCGTCAGCCCGAAGATGAAg                                                                                <  1:103411/148‑1 (MQ=255)                                                                     tCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccatta                                                             <  2:282314‑M2/149‑71 (MQ=255)                                                                         cacGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccattaataa                                                         <  2:139443‑M2/149‑75 (MQ=255)                                                                           cGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGCAAc                                                       >  1:101890/1‑149 (MQ=255)                                                                                  aCCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGAt                                                <  1:311094/149‑1 (MQ=255)                                                                                  aCCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGAt                                                <  2:27856/149‑1 (MQ=255)                                                                                        tgggtggtGATTTTGCGATAAACGATTCGGATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAg                                          <  2:298434/147‑1 (MQ=255)                                                                                         cggtgGGGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccattaataacgacatgctcgttatg                                         >  1:282314‑M2/1‑59 (MQ=255)                                                                                                    ttGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCgctgct                              <  2:77909/149‑1 (MQ=255)                                                                                                         aTCAACGATTCGTATGGGCCGCCCGCTACAACATGTCTCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGCTTa                         >  2:263935/1‑149 (MQ=255)                                                                                                            aaCGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACgg                      <  2:56178/149‑1 (MQ=255)                                                                                                                   cGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGacac               <  2:329072/149‑1 (MQ=255)                                                                                                                         ggCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGACACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACacaggtac         >  2:67830/1‑149 (MQ=255)                                                                                                                         ggCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACacaggtac         >  1:187519/1‑149 (MQ=255)                                                                                                                                aGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACACAGGTACAGGTaaa  <  1:192956/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                  CATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACACAGGTACAGGTAAA  >  CP009273/1381421‑1381696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.