New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2298095 =	NA (NA)	12 (0.150)	8/274	10.8	18.9%	noncoding (200/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	CP009273	2298176 =	54 (0.620)					noncoding (281/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTC  >  CP009273/2297951‑2298198                                                                                                                                                 |                                                                                                        ccTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGGCGCTGGGGCGTCTTATCAGGCCTaca                                                                                                     >  2:59547/1‑149 (MQ=255)  gggATGCCACGCTGCCCCGCCGTATGCGGCCTACACGGCTGCGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTacac                                                                                                    <  2:649179/147‑1 (MQ=14)  cTGATGCGACGCTGGAGAGTCTTATCAGGCCTACACCGCTGTGATGTGCGGCACCACGTAGGTCCTACACGACAGGCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGGCTTATCAGGCCGaccg                                                                                                    >  2:670898/1‑147 (MQ=14)     ataagacgcgccagcgTCGCATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGc                                                                                                 >  1:916451/14‑149 (MQ=14)      tGCGACGCGCGTGCGTCGCATCAGGCCGACCCCGCTGTGAAGCGCCCCACCCCGCAGGTCAGACAAGGCGGGAACGCCGCATCCGACATCCAACCTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCt                                                                                                <  2:557162/149‑1 (MQ=11)              tGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTAACAGGCCTACACCGCTGTGAAGTg                                                                                        >  1:1300970/1‑149 (MQ=255)                gcgcGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGCTGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCt                                                                                      >  1:1013813/1‑149 (MQ=255)                 ctcgTCTTTTCAGCCCAACACCACGGTGACGTGCGGCACCCTCGAGCTCAGATTCGGCCGTCACGCCTCATCCGACATCCAACGCCCGGGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTTTGAAGTGCTc                                                                                     <  2:406435/147‑1 (MQ=11)                 cgcgTCGTATCGGCGCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTGATCCGGCCTACACCGCTGTGAAGTGCTc                                                                                     <  1:1086010/149‑1 (MQ=14)                  gcgTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTcc                                                                                    <  2:1118307/149‑1 (MQ=255)                      cTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGCTGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCAccc                                                                                >  1:317765/1‑149 (MQ=255)                      cTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTGTCCGGCCTACACCGCTGCGAAGTGCCCCAccc                                                                                >  1:682372/1‑149 (MQ=255)                      cTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCCTATCAGGCCCACACCGCGGCGCAGTGCTCCAccc                                                                                >  1:318376/1‑149 (MQ=17)                          tCAGGCCTACACCGCTGTGAGGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGGCTTATCAGGCCTACACGGCGGAGAGATGCGCCAcccccac                                                                            >  2:726653/1‑146 (MQ=14)                          tCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTa                                                                            >  1:1304961/1‑149 (MQ=255)                          tCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCCGTGAAGCGCGCCACCCCGTa                                                                            >  1:935159/1‑149 (MQ=255)                           ggggCCTACACCGGTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAg                                                                           <  2:60528/147‑1 (MQ=255)                           cggggaccaacCGCTGTGAAGTGCGGCACCCCGGAGGTCCGACAAGGCGCTCCCGCAGCATCCGACATCCAACGCCCGCGCCGGTTGCCTGATGCGACGCTGGCGCGCCTTATCAGGCCTACGCCGCTGTGAAGTGCGCCACCCCGTAg                                                                           <  2:176316/140‑1 (MQ=11)                            aGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGTGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGCAgg                                                                          >  2:793541/1‑149 (MQ=255)                               ccTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGATAAGGCGGTTACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACACCGTAGGTCg                                                                       >  1:427488/1‑149 (MQ=255)                                ccacgccGCTGTGAAGCGCGGCGCCCCGGAGGGCAGACAAGGCGGACACGCCCGTTCCGACTCTCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCgg                                                                      <  1:613456/144‑1 (MQ=14)                                cTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCgg                                                                      <  1:996337/149‑1 (MQ=255)                                 gacacGGCGGTGAAGGGCGGCACCCCGTAGGTCAGACAAGGCGGTCCCGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTAGCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGa                                                                     <  1:598651/148‑1 (MQ=11)                                    acCGCTGTGAAGTGCGGAAACCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCGGGCGCGTCTTATCAGGCGTACAGCGCTGTGAAGTGCTCCACCCCGTCGGTCGGATaa                                                                  >  2:1386172/1‑149 (MQ=14)                                      cGCTGTGAAGTGCGGCACCCCGTAGGTCGGACAAGGCGGTGACGCGGCATCCGACATAGAGCGCCCGCGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAgg                                                                >  2:278822/1‑149 (MQ=14)                                      cGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAgg                                                                >  1:1280464/1‑149 (MQ=255)                                         tgtgAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGGATGGCAAGCTGGGAATTGCTCCACCCCGTAGGTCGGATAAGGCgg                                                             >  2:306776/1‑149 (MQ=14)                                          gtgAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATAAGGCCTACACCGATGTGAAGTGCTCCACCCCGTCGGTCGGATAAGGCGGt                                                            <  1:924022/149‑1 (MQ=255)                                          ggtaaGTGCGGCACCCGGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCTACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGt                                                            <  2:977579/146‑1 (MQ=255)                                           tgAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGtt                                                           >  1:530851/1‑149 (MQ=40)                                            gAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTa                                                          <  1:61262/149‑1 (MQ=255)                                                tGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTCGGAGGAGCGCACTGCTGGGAAGGGGTGCAGCCCGTAGGTTGGATATGGCGGGTAcgcg                                                      >  2:1065450/1‑148 (MQ=11)                                                tGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTAcgcc                                                      <  1:430645/149‑1 (MQ=255)                                                tGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTAcgcc                                                      <  1:1391048/149‑1 (MQ=255)                                                tGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTAcgcc                                                      <  1:1391044/149‑1 (MQ=255)                                                  cGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTc                                                                                     <  1:363839/116‑1 (MQ=31)                                                  cGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTc                                                                                     >  2:363839/1‑116 (MQ=31)                                                    gCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCAt                                                  <  2:461567/149‑1 (MQ=255)                                                     cACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATc                                                 >  1:514828/1‑149 (MQ=255)                                                       ccccGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCg                                               <  2:1225915/149‑1 (MQ=255)                                                       ccccGTAGGGCAGAGACGGCGGTAACGCCGCATCCGCCATCCAAGGCCCGAGCCGGTTGCCTGAGGCGACGCGGGCACGTCGTAGCTGGCCTACACTGCCGTGAAGTGCCCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCg                                               <  2:1225297/149‑1 (MQ=11)                                                         ccGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTcc                                                                                    >  2:445572/1‑110 (MQ=32)                                                         ccGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTcc                                                                                    <  1:445572/110‑1 (MQ=32)                                                            tAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCCGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGCCACCCCGTCGGTCGCATAAGGCGCTTACGACGCCTCCGGCacg                                          >  1:379950/1‑147 (MQ=11)                                                             aGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCt                                         <  1:1111386/149‑1 (MQ=255)                                                              ggTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTAcgc                                                       <  2:394375/134‑1 (MQ=255)                                                              ggTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTAcgc                                                       >  1:394375/1‑134 (MQ=255)                                                               gTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTaa                                       >  1:423400/1‑149 (MQ=255)                                                                    aCAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCCGACGccc                                  >  1:1309853/1‑149 (MQ=255)                                                                      aaGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGAc                                             >  2:16818/1‑136 (MQ=35)                                                                      aaGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGAc                                             <  1:16818/136‑1 (MQ=37)                                                                      aaGGCGGGCACGCCGCATCCGACATCCAACGCCCGTGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCaa                                <  2:910757/149‑1 (MQ=21)                                                                        ggCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGc                              <  1:238174/149‑1 (MQ=35)                                                                         gCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGGTACGCCGCATCCGACATCTAACGCCCAAGcc                             >  1:1004300/1‑149 (MQ=25)                                                                              cACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCCGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTg                        >  2:1378705/1‑149 (MQ=18)                                                                               gcgccgcATCCGACATCCAACCCCCGAGCCGGTTGCCGGAGGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGc                       <  2:138425/148‑1 (MQ=255)                                                                               ccgcggcATCCGACATCCACCGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGc                       <  2:974478/148‑1 (MQ=17)                                                                               aCGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGAt                                                                    >  2:600817/1‑104 (MQ=33)                                                                               aCGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGAt                                                                    <  1:600817/104‑1 (MQ=32)                                                                               aCGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCTACATCTAACGCCCAAGCCGGTTGc                       <  1:1084562/149‑1 (MQ=17)                                                                               aCGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGc                       <  2:1300970/149‑1 (MQ=32)                                                                               aCGCCGCATCCGACATCCAACCCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGc                       <  1:1309207/149‑1 (MQ=17)                                                                               aCGCCACATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCCGCTTGTGCGGCCTGCAGGGATGGGGAGTGGTTGCCCGTGTAGGTCGGGGAGGGCGCCGACGCAGCATCCGACAAATAACGCCCAAGCCGGTTGc                       >  2:313885/1‑149 (MQ=2)                                                                                cgccgcATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGcc                      <  1:173846/149‑1 (MQ=32)                                                                                 gccgcATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTcc                                                                                    >  2:97956/1‑86 (MQ=33)                                                                                 gccgcATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTcc                                                                                    <  1:97956/86‑1 (MQ=33)                                                                                 gccgcATCCGACATCCAACGCCCGAGCCGGTTGCCCGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCt                     <  1:1378705/149‑1 (MQ=17)                                                                                    gcATCCGACATCCAACGCCCGGGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTCTAAGCCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGAt                  <  1:700303/149‑1 (MQ=255)                                                                                       tCCGACATCCAACGCCCGGGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGAc                                             <  2:1381699/119‑1 (MQ=17)                                                                                       tCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGAc                                             >  1:1381699/1‑119 (MQ=33)                                                                                        ccGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGGCGTGCTCCACCCCGTGGGTCGGCTAAGGCGGTTACGCCGCATCCGACATCTAACGCCCGAGCCGGTTGCCTGATGCGa              >  2:602270/1‑149 (MQ=11)                                                                                        ccGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGa              <  1:1376867/149‑1 (MQ=32)                                                                                         cGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGTGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGAc             <  1:402005/149‑1 (MQ=17)                                                                                          gACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGtt                         <  2:330176/136‑1 (MQ=33)                                                                                          gACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGtt                         >  1:330176/1‑136 (MQ=33)                                                                                          gACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACg            >  2:801832/1‑149 (MQ=32)                                                                                            cATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCt          <  1:313885/149‑1 (MQ=32)                                                                                             aTCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTc                                                                        >  2:1147230/1‑86 (MQ=35)                                                                                                cAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCATACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGGGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGGTGCGGCGCGGgcg      >  1:440055/1‑149 (MQ=11)                                                                                                    gCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTc  <  1:801832/149‑1 (MQ=31)                                                                                                                                                 |                                                                                                        CCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTC  >  CP009273/2297951‑2298198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.