New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1310652	34 (0.620)	5 (0.100)	5/280	6.2	13.9%	intergenic (‑360/+21)	yciG/trpA	KGG family protein/tryptophan synthase, alpha subunit
	?	CP009273	= 1310657	30 (0.580)					intergenic (‑365/+16)	yciG/trpA	KGG family protein/tryptophan synthase, alpha subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGTTGCGGGATTAATTTGTTTGATTATATTACTGTTGGGCGGAAAAATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1310498‑1310652 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccagTTCCGCTGGCGGCATTTTAACTTTCTTTAATGAAGCCGGAAAAATCCTAAATTCATTTAATATTTATCTTTTTACCGTTTCGCTTACCCCGGTCGAACGTCAACTTACGTCATTTTTCCGCCCAACAGTAATATAATCAAAC  <  CP009273/1310657‑1310516                                                                                                                                                                                                                                                                                                           ATGTTGCGGGATTAATTTGTTTGATTATATTACTGTTGGGCGGAAAAATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGATTCATTAAAGAAAGTTAAAATGC                                                                                                                                                      >  1:561215/1‑149  TGTTGCGGGATTAATTTGTTTGATTATATTACTGTTGGGCGGAAAAATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCC                                                                                                                                                     <  2:324805/149‑1    TTGCGGGATTAATTTGTTTGATTATATTACTGTTGGGCGGAAAAATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAAAGGCAGAAGGGTTTTTGCGGGTGCATGAAAGAAAGTTAAAATGCCGC                                                                                                                                                   >  2:606185/1‑149                      TGATTATATTACTGTTGGGCGGAAAAATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGTTCCGCTGGCGGCAT                                                                                                                                 <  1:108035/149‑1                             ATTACGGTTGGGGGGAAAAATGACGTAAGTTGACGTTCGATCGGGGTATGCGAAACGGTCAAAAGATAAATATTAAATTAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTTAAATGCCGCCAGTTCCGCTGGCGGCATTTTAACT                                                                                                                          <  1:423901/149‑1                                      GGGCGGAAAAATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGTTCCGCTGGCGGCATTTTAACTTTCTTTAAT                                                                                                                 >  1:557715/1‑149                                             AAAATGACGTAAGTTGACGTTGGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGTTCCGCTGGCGGCATTTTAACTTTCTTTAATGAAGCCG                                                                                                          <  1:156425/149‑1                                               AATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGTTCCGCTGGCGGCATTTTAACTTTCTTTAATGAAGCCGGA                                                                                                        <  2:557715/149‑1                                                                                                                                                  ccgcgGCCAGTCCCGCTGCCGGCATTTTCACTATCTTTAATGAAGCCGGAAAAATCCTAAATTCATTTAATATTGATCTTATTACCGTTTCGCTTACCCCGGTCGAACGTCAACTTACGTCATTTTTCCGCCCAACAGTAATATAATCA     <  1:502982/144‑1                                                                                                                                                    GCCGCCAGTTCCGCTGGCGGCATTTTAACTTTCTTTAATGAAGCCGGAAAAATCCTAAATTCATTTAATATTTATCTTTTTACCGTTTCGCTTACCCCGGTCGAACGTCAACTTACGTCATTTTTCCGCCCAACAGTAATATAATCAAA   <  1:734187/149‑1                                                                                                                                                    GCCGCCAGTTCCGCTGGCGGCATTTTAACTGTCTTTAATGAAGCCGGAAAAATCCTAAATTCATTTAATATTTATCTTTCTACCGTTTCGCTTACCCCGGTCGAACGTCAACTTACGTCATTTTTCCGCCCAACAGTAATATAATCAAA   <  2:85644/149‑1                                                                                                                                                     CCGCCAGTTCCGCTGGCGGCATTTTAACTTTCTTTAATGAAGCCGGAAAAATCCTAAATTCATTTAATATTTATCTTTTTACCGTTTCGCTTACCCCGGTCGAACGTCAACTTACGTCATTTTTCCGCCCACCAGTAATATAATCAAAC  >  1:108510/1‑149                                                                                                                                                                                                                                                                                                           ATGTTGCGGGATTAATTTGTTTGATTATATTACTGTTGGGCGGAAAAATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1310498‑1310652 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccagTTCCGCTGGCGGCATTTTAACTTTCTTTAATGAAGCCGGAAAAATCCTAAATTCATTTAATATTTATCTTTTTACCGTTTCGCTTACCCCGGTCGAACGTCAACTTACGTCATTTTTCCGCCCAACAGTAATATAATCAAAC  <  CP009273/1310657‑1310516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.