New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 131065234 (0.620)5 (0.100) 5/280 6.2 13.9% intergenic (‑360/+21) yciG/trpA KGG family protein/tryptophan synthase, alpha subunit
?CP009273 = 1310657 30 (0.580)intergenic (‑365/+16) yciG/trpA KGG family protein/tryptophan synthase, alpha subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTTGATTATATTACTGTTGGGCGGAAAAATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAAAAACTTTCAGTGCCGCCAGCATTTTCTCTGGCTCATTAATATGTTGCTCGATGATTTTAACAATGGCCGAACCAGAAATCGCGCCCGCAGCT  >  CP009273/1310516‑1310799
                                                                                                                                        |                                                                                                                                                   
gtttgATTATATTACTGGTGGGCGGAAAAATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTggcgg                                                                                                                                         <  1:108510/149‑1 (MQ=255)
 tttgATTATATTACTGTTGGGCGGAAAAATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAGAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGACAGTTAAAATGCCGCCAGCGGAACTggcggc                                                                                                                                        >  2:85644/1‑149 (MQ=255)
 tttgATTATATTACTGTTGGGCGGAAAAATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTggcggc                                                                                                                                        >  1:734187/1‑149 (MQ=255)
   tgATTATATTACTGTTGGGCGGAAAAATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAATAAGATCAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGATAGTGAAAATGCCGGCAGCGGGACTggccgcgg                                                                                                                                      >  1:502982/1‑147 (MQ=255)
           ttACTGTTGGGCGGAAAAATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTa                                                                                                                              >  1:171316/1‑149 (MQ=255)
            tACTGTTGGGCGGAAAAATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCACTAAAGAAAGATAAAATGCCGCCAGCGGAAATGGAGGCGGTGGGATTac                                                                                                                             >  1:163469/1‑148 (MQ=255)
             aCTGTTGGGCGGAAAAATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAAc                                                                                                                            <  2:145186/149‑1 (MQ=255)
             aCTGTTGGGCGGAAAAATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCGGTGGGATTAAc                                                                                                                            >  2:475923/1‑149 (MQ=255)
                gTTGGGCGGAAAAATGACGGAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAAATAAATATTAAGAGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCCGTGGGCTTatgtgc                                                                                                                         >  2:83293/1‑144 (MQ=255)
                             aTGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCttt                                                                                                            <  2:438128/149‑1 (MQ=255)
                              tGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGATGTGGGATTAACTGCGCGTCGCGGCTTTc                                                                                                           >  1:373425/1‑149 (MQ=255)
                               gACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCa                                                                                                          <  1:705267/149‑1 (MQ=255)
                                aCGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCAt                                                                                                         >  2:763741/1‑149 (MQ=255)
                                aCGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCAt                                                                                                         >  2:346395/1‑149 (MQ=255)
                                   tAAGTTGACGTTCGACTGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCgg                                                                                                      <  2:184117/149‑1 (MQ=255)
                                       tggACGTGCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGt                                                                                                  <  2:729584/147‑1 (MQ=255)
                                                       gTAAGCGAAACGGGAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGAAACAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAGCTGCGCGTCGGCGCTGTCATCGGTTGGACAAAAACTTTCAGTg                                                                                  >  1:615954/1‑149 (MQ=255)
                                                              aaaCGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGTAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTAGACAAACTTTCAGTGCCGCCAg                                                                           >  1:294400/1‑149 (MQ=255)
                                                              aaaCGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAAAAACTTTCGGTGCCGCCAg                                                                           >  2:322360/1‑149 (MQ=255)
                                                                       aaaGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAAAAACTTTCAGTGCCGCCAGCATTTtctc                                                                  >  2:489190/1‑149 (MQ=255)
                                                                                  ttAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAAAAACTTTCAGTGCCGCCAGCATTTTCTCTGGCTCATTaa                                                       >  2:551816/1‑149 (MQ=255)
                                                                                            ttAGGATTTTTCCGGCTTCCTTAACGCGAGTTCAACCGCCGCCAGCGGAACTGGCGGCTGTGGGATTTGCTTGGCTGCGCCGCTTTCATCGGTTTTACAAAAGCGTTCAGTGCCGCCAGCATTTTCTCTGGCTCATTAATATGTTGCTc                                             <  1:742472/149‑1 (MQ=255)
                                                                                                   ttttCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAAAAACTTTCAGTGCCGCCAGCATTTTCTCTGGCTCATTAATATGTTGCTCGATGAtt                                      <  2:682827/149‑1 (MQ=255)
                                                                                                     ttCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAAAAACTTTCAGTGCCGCCAGCATTTTCTCTGGCTCATTAATATGTTGCTCGATGAtttt                                    <  2:734187/149‑1 (MQ=255)
                                                                                                       ccGGCTTCATTAAAGAAAGTGAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAAAAACTTTCAGTGCCGCCAGCATTTTCTCTGGCTCATTAATATGTTGCTCGATGATTTTaa                                  <  1:474120/149‑1 (MQ=255)
                                                                                                           cTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAAAAACTTTCAGTGCCGCCAGCATTTTCTCTGGCTCATTAATATGTTGCTCGATGATTTTAACAAt                              >  2:661729/1‑149 (MQ=255)
                                                                                                               aTTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAAAAACTTTCAGTGCCGCCAGCATTTTCTCTGGCTCATTAATATGTTGCTCGATGATTTTAACAATGGcc                          >  2:530373/1‑149 (MQ=255)
                                                                                                                  aaagaaagTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAAAAACTTTCAGTGCCGCCAGCATTTTCTCTGGCTCATTAATATGTTGCTCGATGATTTTAACAATGGCCGaa                       <  1:802794/149‑1 (MQ=255)
                                                                                                                   aagaaagTTAAGATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAAAAACTTTCAGTGCCGCCAGCATTTTCTCTGGCTCATTAATATGTTGCTCGATGATTTTAACAATGGCCGAAc                      <  2:376826/149‑1 (MQ=255)
                                                                                                                   aagaaagTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAAAAACTTTCAGTGCCGCCAGCATTTTCTCTGGCTCATTAATAAGTTGCTCGATAATTTTAACAAAGGCCGAAc                      >  2:193771/1‑149 (MQ=255)
                                                                                                                           tAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAAAAACTTTCAGGGCCGCCAGCATTTTCTCTGGCTCATTAATATGTTGCTCGATGATTTTAACAATGGCCGAACCAGAAATc              <  2:171316/149‑1 (MQ=255)
                                                                                                                             aaaTGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTAGTACAAAAACTTTCAGTGCCGCCAGCATTTTCTCTGGCTCATTAATATGTTGCTCGATGATTTTAACAATGGCCGAACCAGAAATcgc            <  1:763741/149‑1 (MQ=255)
                                                                                                                              aaTGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAAAAACTTTCAGTGCCGCCAGCATTTTCTCTGGCTCATTAATCTGTTGCTCGATGATTTTAACCATGGCCGAACCAGAAATcgcg           >  2:857373/1‑149 (MQ=255)
                                                                                                                                       aGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAAAAACTTTCAGTGCCGCCCGCATTTTCTCTGGCTCATTAATATGTTGCTCGATGATTTTAACAATGGCCGAACCAGAAATCGCGCCCGCAGCt  >  1:874774/1‑149 (MQ=255)
                                                                                                                                        |                                                                                                                                                   
GTTTGATTATATTACTGTTGGGCGGAAAAATGACGTAAGTTGACGTTCGACCGGGGTAAGCGAAACGGTAAAAAGATAAATATTAAATGAATTTAGGATTTTTCCGGCTTCATTAAAGAAAGTTAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAAAAACTTTCAGTGCCGCCAGCATTTTCTCTGGCTCATTAATATGTTGCTCGATGATTTTAACAATGGCCGAACCAGAAATCGCGCCCGCAGCT  >  CP009273/1310516‑1310799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.