New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1990235 =	41 (0.750)	4 (0.080)	4/286	6.9	9.2%	coding (79/723 nt)	sdiA	quorum‑sensing transcriptional activator
	?	CP009273	1990253 =	39 (0.740)					coding (61/723 nt)	sdiA	quorum‑sensing transcriptional activator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTTTTGCCTGATAATAACTAACCCACGCCTCAGGGTAATTGGTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTTATAATGATAATTCAAACTATCACATAAATA  >  CP009273/1990090‑1990379                                                                                                                                                  |                                                                                                                                                 ctttttGCCTGATAATAACTAACCCACGCCTCAGGGTAATTGGTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTAATCCAGCTGCTGAGCATGAAGCTCAATTTCATGGTAGAc                                                                                                                                               <  2:480395/148‑1 (MQ=255)         ctcataataACTAACCCACGCCTCAGGGGAATTGGTGTAAAAAGCCACTTTAGGTCGCGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTg                                                                                                                                       <  2:540489/146‑1 (MQ=255)            ataataACTAACCCACGCCTCAGGGTAATTGGTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCgg                                                                                                                                    <  1:641622/149‑1 (MQ=255)             taataaCTAACCCACGCCTCAGGGTAATTGGTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGt                                                                                                                                   <  2:801695/149‑1 (MQ=255)               ataaCGAACCCACGCCTCAGGTTAATTGTTGTAACAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTCCTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGtct                                                                                                                                 <  1:312499/149‑1 (MQ=255)                      acCCACGCCTCAGGGTAATTGGTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCct                                                                                                                          >  1:60922/1‑149 (MQ=255)                          actccTCAGGGTAATTGGTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGa                                                                                                                      >  1:378747/4‑149 (MQ=255)                           cGCCTCAGGGTAATTGGTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGaa                                                                                                                     <  1:245863/149‑1 (MQ=255)                             ccTCAGGGTAATTGGTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGaaaa                                                                                                                   <  2:220898/149‑1 (MQ=255)                              cTCAGGGTAATTGGTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGGCCTCTTCTGCGGTCTCCATCCTCTGAAAAc                                                                                                                  >  2:17067/1‑149 (MQ=255)                                          ggTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCg                                                                                                      >  2:321808/1‑149 (MQ=255)                                          ggTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACAGGGAGGCGGAGACATGACGAATAGTAATCATACTCCGGCTGCTGAGCCTGAAGCTCAATTTCATGGTGGACGTCTTCTGCGGTCGCCATCCTCTGACAACGCAACAGGATCg                                                                                                      >  1:591463/1‑149 (MQ=255)                                               aaaaaCCCACTTTCGGTACAGTTAATGGTACCGGGGTGCCGACACATCACGAATAGTAATCGTTCTCCAGCCGCCGAGCCTGCAGCTCAATTTCATCGGAGACCTCTTCTGCGGTCTCCACCCTCTGAAAACGCAACAGCATCGTGCGa                                                                                                 <  1:28821/149‑1 (MQ=255)                                                 aaaGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACg                                                                                               >  1:280068/1‑149 (MQ=255)                                                      cccTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGc                                                                                          <  1:755742/147‑1 (MQ=255)                                                      cACTTTAGTTCGAGTCAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGc                                                                                          <  1:836335/149‑1 (MQ=255)                                                           tAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGaaa                                                                                     <  2:720147/149‑1 (MQ=255)                                                               tCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAAt                                                                                 >  2:58922/1‑149 (MQ=255)                                                                cGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATc                                                                                <  2:140011/149‑1 (MQ=255)                                                                        tGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCt                                                                        <  1:47435/149‑1 (MQ=255)                                                                          gTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGc                                                                      >  1:688980/1‑149 (MQ=255)                                                                           tACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCa                                                                     <  1:874463/149‑1 (MQ=255)                                                                            aCCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCAt                                                                    <  2:773647/149‑1 (MQ=255)                                                                             ccGGGGGGCGGACACACAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATa                                                                   <  2:49173/149‑1 (MQ=255)                                                                                  tGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTATGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTaaa                                                              >  1:422423/1‑149 (MQ=255)                                                                                       gACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCa                                                         <  2:380817/149‑1 (MQ=255)                                                                                            aTAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGtcttc                                                                                                                               >  2:563188/1‑72 (MQ=255)                                                                                            aTAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGtcttc                                                                                                                               <  1:563188/74‑3 (MQ=255)                                                                                             tAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGccc                                                   >  2:574466/1‑149 (MQ=255)                                                                                                cGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTg                                                <  2:878731/149‑1 (MQ=255)                                                                                                   aTAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTgaga                                             <  2:440508/149‑1 (MQ=255)                                                                                                        aaTCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAgagtgag                                        <  1:321808/149‑1 (MQ=255)                                                                                                          tCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAgagtga                                         <  1:434344/146‑1 (MQ=255)                                                                                                          tCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAgagtga                                         >  2:434344/1‑146 (MQ=255)                                                                                                                tCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGGCGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAAAGCCCCTGAGAGTGAGTCTCAttt                                >  2:198779/1‑149 (MQ=255)                                                                                                                 ccAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTta                               <  2:60922/149‑1 (MQ=255)                                                                                                                   aGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTtata                             >  2:497970/1‑149 (MQ=255)                                                                                                                    gctgctGCGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTTATaa                            <  2:60081/149‑1 (MQ=255)                                                                                                                       tctgAGCCGGAAGCTCCATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTTATAATGa                         <  1:775426/148‑1 (MQ=255)                                                                                                                                    cTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTTATAATGATAATTCAAACTAt            >  2:150277/1‑149 (MQ=255)                                                                                                                                              tGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAATCGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTTATAATGATAATTCAAACTATCACataaata  <  2:667870/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                 TTTTTTGCCTGATAATAACTAACCCACGCCTCAGGGTAATTGGTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTTATAATGATAATTCAAACTATCACATAAATA  >  CP009273/1990090‑1990379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.