New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1990235 =	41 (0.750)	4 (0.080)	4/286	6.9	9.2%	coding (79/723 nt)	sdiA	quorum‑sensing transcriptional activator
	?	CP009273	1990253 =	39 (0.740)					coding (61/723 nt)	sdiA	quorum‑sensing transcriptional activator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACCCACGCCTCAGGGTAATTGGTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTTATAATGATAATTCAAACTATCACATAAATAAGATTTATATATAATTTA  >  CP009273/1990111‑1990397                                                                                                                                               |                                                                                                                                                 acCCACGCCTCAGGGTAATTGGTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCct                                                                                                                                            >  1:60922/1‑149 (MQ=255)     actccTCAGGGTAATTGGTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGa                                                                                                                                        >  1:378747/4‑149 (MQ=255)      cGCCTCAGGGTAATTGGTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGaa                                                                                                                                       <  1:245863/149‑1 (MQ=255)        ccTCAGGGTAATTGGTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGaaaa                                                                                                                                     <  2:220898/149‑1 (MQ=255)         cTCAGGGTAATTGGTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGGCCTCTTCTGCGGTCTCCATCCTCTGAAAAc                                                                                                                                    >  2:17067/1‑149 (MQ=255)                     ggTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCg                                                                                                                        >  2:321808/1‑149 (MQ=255)                     ggTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACAGGGAGGCGGAGACATGACGAATAGTAATCATACTCCGGCTGCTGAGCCTGAAGCTCAATTTCATGGTGGACGTCTTCTGCGGTCGCCATCCTCTGACAACGCAACAGGATCg                                                                                                                        >  1:591463/1‑149 (MQ=255)                          aaaaaCCCACTTTCGGTACAGTTAATGGTACCGGGGTGCCGACACATCACGAATAGTAATCGTTCTCCAGCCGCCGAGCCTGCAGCTCAATTTCATCGGAGACCTCTTCTGCGGTCTCCACCCTCTGAAAACGCAACAGCATCGTGCGa                                                                                                                   <  1:28821/149‑1 (MQ=255)                            aaaGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACg                                                                                                                 >  1:280068/1‑149 (MQ=255)                                 cccTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGc                                                                                                            <  1:755742/147‑1 (MQ=255)                                 cACTTTAGTTCGAGTCAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGc                                                                                                            <  1:836335/149‑1 (MQ=255)                                      tAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGaaa                                                                                                       <  2:720147/149‑1 (MQ=255)                                          tCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAAt                                                                                                   >  2:58922/1‑149 (MQ=255)                                           cGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATc                                                                                                  <  2:140011/149‑1 (MQ=255)                                                   tGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCt                                                                                          <  1:47435/149‑1 (MQ=255)                                                     gTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGc                                                                                        >  1:688980/1‑149 (MQ=255)                                                      tACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCa                                                                                       <  1:874463/149‑1 (MQ=255)                                                       aCCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCAt                                                                                      <  2:773647/149‑1 (MQ=255)                                                        ccGGGGGGCGGACACACAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATa                                                                                     <  2:49173/149‑1 (MQ=255)                                                             tGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTATGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTaaa                                                                                >  1:422423/1‑149 (MQ=255)                                                                  gACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCa                                                                           <  2:380817/149‑1 (MQ=255)                                                                        tAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGccc                                                                     >  2:574466/1‑149 (MQ=255)                                                                           cGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTg                                                                  <  2:878731/149‑1 (MQ=255)                                                                              aTAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTgaga                                                               <  2:440508/149‑1 (MQ=255)                                                                                   aaTCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAgagtgag                                                          <  1:321808/149‑1 (MQ=255)                                                                                     tCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAgagtga                                                           >  2:434344/1‑146 (MQ=255)                                                                                     tCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAgagtga                                                           <  1:434344/146‑1 (MQ=255)                                                                                           tCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGGCGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAAAGCCCCTGAGAGTGAGTCTCAttt                                                  >  2:198779/1‑149 (MQ=255)                                                                                            ccAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTta                                                 <  2:60922/149‑1 (MQ=255)                                                                                              aGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTtata                                               >  2:497970/1‑149 (MQ=255)                                                                                               gctgctGCGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTTATaa                                              <  2:60081/149‑1 (MQ=255)                                                                                                  tctgAGCCGGAAGCTCCATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTTATAATGa                                           <  1:775426/148‑1 (MQ=255)                                                                                                               cTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTTATAATGATAATTCAAACTAt                              >  2:150277/1‑149 (MQ=255)                                                                                                                         tGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAATCGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTTATAATGATAATTCAAACTATCACataaata                    <  2:667870/149‑1 (MQ=255)                                                                                                                               aCCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCACCGCCCCTGAGAGTGAGTATCATTTATAATGATAATTCAAACTATCACATAAATAAGAttt              >  1:427309/1‑149 (MQ=255)                                                                                                                                    ttctGCGGTCTCCATCATCTGAAAACGCAACAGCCTCGTGCGACGCAAGCTGGAAAACTCCTTATCCTGCGTAGTAACCCGCCAGGCACCTGCGACTGAGTATCATTTATAATGATCATTCATAGTATCACataagtagggactatata         >  1:470846/1‑138 (MQ=255)                                                                                                                                      ctGCGGTCTCCATCCTCCGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTTATAATGATAATTCAAACTATCACATAAATAAGATTtatatata       >  1:640917/1‑149 (MQ=255)                                                                                                                                       tGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTTATAATGATAATTCAACCTATCACATAAATAAGATTTATATTTaa      >  1:379205/1‑149 (MQ=255)                                                                                                                                       tGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTTATAATGATAATTCAAACTATCACATAAATAAGATTTATATATaa      >  2:541559/1‑149 (MQ=255)                                                                                                                                           gTCTCCATCCCCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTTATAATGATAATTCAAACTATCACATAAATAAGATTTATATATAATTta  <  2:111478/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                 ACCCACGCCTCAGGGTAATTGGTGTAAAAAGCCACTTTAGGTCGAGTGAATGGTACCGGGTGGCGGACACATAACGAATAGTAATCGTACTCCAGCTGCTGAGCCTGAAGCTCAATTTCATGGTAGACCTCTTCTGCGGTCTCCATCCTCTGAAAACGCAACAGCATCGTGCGACGCCAGCTGAAAAAATCCTTATCCTGCATAGTAAACCGCAACGCCCCTGAGAGTGAGTATCATTTATAATGATAATTCAAACTATCACATAAATAAGATTTATATATAATTTA  >  CP009273/1990111‑1990397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.