New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3559560 =	28 (0.560)	3 (0.060)	3/274	NT	8.5%	coding (382/2448 nt)	glgP	glycogen phosphorylase
	?	CP009273	3559591 =	37 (0.750)					coding (351/2448 nt)	glgP	glycogen phosphorylase

CTCTTTCTGGCTACCGTTAACGATGTTCTGCTTGAACATACCGTAGTCATAGCGGATGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGCCAATC  >  CP009273/3559441‑3559702                                                                                                                        |                                                                                                                                               agtttttgattggccggacgctctccaacgccatgttgtcgctaggaatttacgaagatgtacagggcgcactggaagcgatggggttaaatctcgaagagctgattgatgaagaaaatGACCCAGGCCACCGTTACCGAGGCCTGGGt                                                                                                                   >  2:221422‑M1/120‑149 (MQ=255)         tgcgcccGTTCGCGCTGTCCTGCTTGAACATCCCGTAGTCATGGCGGATGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTttct                                                                                                           <  2:121668/144‑1 (MQ=255)         ggcccccGTCAGCGATGTTCGCCTGCAACATACCGTAGTCATAGCGGATGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTttct                                                                                                           <  2:573664/144‑1 (MQ=255)         ggCTACCGTTAACGATGTTCTGCTTGAACATACCGTAGTCATAGCGGATGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGCAGCAAGCCGCCAGCCGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTttct                                                                                                           <  1:725190/149‑1 (MQ=255)            tACCGTTAACGATGTTCTGCTTGAACATACCGTAGTCATAGCGGATGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTtca                                                                                                        >  2:393046/1‑149 (MQ=255)                    ccGATGTTCTGCTTGAACATACCGTAGTCATAGCGGATGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAg                                                                                                <  1:850660/148‑1 (MQ=255)                    aggATGTTCTGCTTGAACATACCGTAGTCATAGCGGATGCCGTACCCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAg                                                                                                <  1:93373/147‑1 (MQ=255)                    aCGATGTGCTGCTTGAACATACCGTAGTCATAGCGGATGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGCCGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAg                                                                                                <  1:667102/149‑1 (MQ=255)                             gctcttgttgtcgctaggaattgacgaagatggacagggcgcgctggaagcggtggggttaaatcccgaagagctgattgatgaagaaaatGTCCCAGGCCACCGTTTCCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCgag                                                                                       >  1:216717‑M1/92‑149 (MQ=255)                                  gatcgcaCCGTAGTCATAGCGGATGCCGTAACCGCGCCCCGGCAGCCCTAACGTCGGTAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTa                                                                                  <  2:719123/143‑1 (MQ=255)                                        acccgaGTCATAGCGGATGCCCTAACCGCCCCCCGGCAACCCTAACCCCCCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTCCATCAATCAGCTCTTCGAGATTTAACCCCa                                                                            <  1:804950/144‑1 (MQ=255)                                                       gATGCCCTAACCCCGCCCCGGCCCCCCTAACGGCGCCAGAGAACCAAGGAAGCAAGCCGCCAGACCCCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTgcgc                                                             <  2:260431/149‑1 (MQ=255)                                                        aTGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCCCTTCGAAATTTAACCCCATAGCTTCCAGTGCGcc                                                            >  1:851750/1‑149 (MQ=255)                                                         tGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGccc                                                           >  1:347916/1‑149 (MQ=255)                                                          gCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCt                                                          >  2:91799/1‑149 (MQ=255)                                                                  cgcgCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACAGCt                                                  >  1:780795/1‑149 (MQ=255)                                                                    cgcCCCGGCAACCCTATCTTCGCCAGAGGATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTc                                                <  1:677404/149‑1 (MQ=255)                                                                    cgcCCCGGCAACCCTAACGTAGCCTGAGAATCAAGGAGGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGCTTTAACCCCATCGCGTCCAGTGCGCCCTGTACATCTTc                                                <  1:650077/149‑1 (MQ=255)                                                                      ccccGGCACCCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGt                                              <  1:142118/149‑1 (MQ=255)                                                                        ccGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATGGGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGGGCCCTGTGCATGTTGGTac                                            >  1:525455/1‑148 (MQ=255)                                                                             aaCCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTcc                                       <  1:393046/149‑1 (MQ=255)                                                                                   aaCGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCTTCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGa                                 <  2:139403/149‑1 (MQ=255)                                                                                                 ttCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCGTTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTgg                   <  2:821817/148‑1 (MQ=255)                                                                                                      ggAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGc              <  1:155299/149‑1 (MQ=255)                                                                                                       gAAGCAAGCCGCCAGCCGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCg             <  1:711113/149‑1 (MQ=255)                                                                                                        aagcaagcCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGt            >  2:304840/1‑149 (MQ=255)                                                                                                          gcaagcCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGGGTGGGAGAGCGTAc          >  2:74475/1‑149 (MQ=255)                                                                                                              tgaagaaaatGACCCAGGCCTCGGTAACGGTGGCCTGGGACATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGcc      <  2:3365‑M1/139‑1 (MQ=255)                                                                                                                cgccAGACCTCCCTGGCCGCCGTTACCGAGGCCTGGGTCATTTTCTTTATCGTTCAGCTCTTCGAGATTTGGCCCCCTCGCTTCCAGTGCGCCCTGTACATCTTCGTTAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGCCaa    <  2:59109/149‑1 (MQ=255)                                                                                                                 gtcAGACCTCCCTGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGCCAAt   <  1:825279/147‑1 (MQ=255)                                                                                                                  ccAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTCGCGACAACATGGCGTTGGAGAGCGTACGGCCAATc  >  1:146029/1‑149 (MQ=255)                                                                                                                  ccAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGCCAATc  >  2:606317/1‑149 (MQ=255)                                                                                                                        |                                                                                                                                               CTCTTTCTGGCTACCGTTAACGATGTTCTGCTTGAACATACCGTAGTCATAGCGGATGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGCCAATC  >  CP009273/3559441‑3559702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.