New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3559560 =	28 (0.560)	3 (0.060)	3/274	NT	8.5%	coding (382/2448 nt)	glgP	glycogen phosphorylase
	?	CP009273	3559591 =	37 (0.750)					coding (351/2448 nt)	glgP	glycogen phosphorylase

GGCTACCGTTAACGATGTTCTGCTTGAACATACCGTAGTCATAGCGGATGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGCCAATCAAAAACTCCATCGACAGGTAGTAAACCTGAC  >  CP009273/3559449‑3559733                                                                                                                                               |                                                                                                                                               tgcgcccGTTCGCGCTGTCCTGCTTGAACATCCCGTAGTCATGGCGGATGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTttct                                                                                                                                          <  2:121668/144‑1 (MQ=255) ggcccccGTCAGCGATGTTCGCCTGCAACATACCGTAGTCATAGCGGATGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTttct                                                                                                                                          <  2:573664/144‑1 (MQ=255) ggCTACCGTTAACGATGTTCTGCTTGAACATACCGTAGTCATAGCGGATGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGCAGCAAGCCGCCAGCCGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTttct                                                                                                                                          <  1:725190/149‑1 (MQ=255)    tACCGTTAACGATGTTCTGCTTGAACATACCGTAGTCATAGCGGATGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTtca                                                                                                                                       >  2:393046/1‑149 (MQ=255)    ggccgtacgctctccaacgccatgttgtcgctaggaatttacgaagatgtacagggcgcactggaagcgatggggttaaatctcgaagagctgattgatgaagaaaatgtcccaggccaccgttaccgaggcctgggtcATTTTCTtca                                                                                                                                       <  2:3365‑M2/10‑1 (MQ=255)            ccGATGTTCTGCTTGAACATACCGTAGTCATAGCGGATGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAg                                                                                                                               <  1:850660/148‑1 (MQ=255)            aggATGTTCTGCTTGAACATACCGTAGTCATAGCGGATGCCGTACCCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAg                                                                                                                               <  1:93373/147‑1 (MQ=255)            aCGATGTGCTGCTTGAACATACCGTAGTCATAGCGGATGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGCCGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAg                                                                                                                               <  1:667102/149‑1 (MQ=255)                     gctcttgttgtcgctaggaattgacgaagatggacagggcgcgctggaagcggtggggttaaatcccgaagagctgattgatgaagaaaatGTCCCAGGCCACCGTTTCCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCgag                                                                                                                      >  1:216717‑M1/92‑149 (MQ=255)                          gatcgcaCCGTAGTCATAGCGGATGCCGTAACCGCGCCCCGGCAGCCCTAACGTCGGTAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTa                                                                                                                 <  2:719123/143‑1 (MQ=255)                                acccgaGTCATAGCGGATGCCCTAACCGCCCCCCGGCAACCCTAACCCCCCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTCCATCAATCAGCTCTTCGAGATTTAACCCCa                                                                                                           <  1:804950/144‑1 (MQ=255)                                               gATGCCCTAACCCCGCCCCGGCCCCCCTAACGGCGCCAGAGAACCAAGGAAGCAAGCCGCCAGACCCCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTgcgc                                                                                            <  2:260431/149‑1 (MQ=255)                                                aTGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCCCTTCGAAATTTAACCCCATAGCTTCCAGTGCGcc                                                                                           >  1:851750/1‑149 (MQ=255)                                                 tGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGccc                                                                                          >  1:347916/1‑149 (MQ=255)                                                  gCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCt                                                                                         >  2:91799/1‑149 (MQ=255)                                                          cgcgCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACAGCt                                                                                 >  1:780795/1‑149 (MQ=255)                                                            cgcCCCGGCAACCCTATCTTCGCCAGAGGATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTc                                                                               <  1:677404/149‑1 (MQ=255)                                                            cgcCCCGGCAACCCTAACGTAGCCTGAGAATCAAGGAGGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGCTTTAACCCCATCGCGTCCAGTGCGCCCTGTACATCTTc                                                                               <  1:650077/149‑1 (MQ=255)                                                              ccccGGCACCCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGt                                                                             <  1:142118/149‑1 (MQ=255)                                                                ccGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATGGGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGGGCCCTGTGCATGTTGGTac                                                                           >  1:525455/1‑148 (MQ=255)                                                                     aaCCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTcc                                                                      <  1:393046/149‑1 (MQ=255)                                                                           aaCGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCTTCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGa                                                                <  2:139403/149‑1 (MQ=255)                                                                                     ctcgaagagctgattgatgaagaaaatgacccaggcctcggaaacggtggcctgggacATTTTCTTCATCAATCAGCTCTTCGGGATTTAACCCCACCGCTTCCAGCGCGCCCTGTCCATCTTCGTCAATTCCtagcgacaacaagagc                                                      >  1:216717‑M2/59‑144 (MQ=255)                                                                                         ttCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCGTTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTgg                                                  <  2:821817/148‑1 (MQ=255)                                                                                              ggAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGc                                             <  1:155299/149‑1 (MQ=255)                                                                                               gAAGCAAGCCGCCAGCCGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCg                                            <  1:711113/149‑1 (MQ=255)                                                                                                aagcaagcCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGt                                           >  2:304840/1‑149 (MQ=255)                                                                                                  gcaagcCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGGGTGGGAGAGCGTAc                                         >  2:74475/1‑149 (MQ=255)                                                                                                      tgaagaaaatGACCCAGGCCTCGGTAACGGTGGCCTGGGACATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGcc                                     <  2:3365‑M1/139‑1 (MQ=255)                                                                                                        cgccAGACCTCCCTGGCCGCCGTTACCGAGGCCTGGGTCATTTTCTTTATCGTTCAGCTCTTCGAGATTTGGCCCCCTCGCTTCCAGTGCGCCCTGTACATCTTCGTTAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGCCaa                                   <  2:59109/149‑1 (MQ=255)                                                                                                         gtcAGACCTCCCTGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGCCAAt                                  <  1:825279/147‑1 (MQ=255)                                                                                                          ccAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTCGCGACAACATGGCGTTGGAGAGCGTACGGCCAATc                                 >  1:146029/1‑149 (MQ=255)                                                                                                          ccAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGCCAATc                                 >  2:606317/1‑149 (MQ=255)                                                                                                                 tCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGCCAATCAAAAACt                          <  2:347916/149‑1 (MQ=255)                                                                                                                 tCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGCCAATCAAAAACt                          <  1:717262/149‑1 (MQ=255)                                                                                                                 ccccAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGCCACTCAAATACt                          <  1:80792/148‑1 (MQ=255)                                                                                                                 acccaggcctcggtaacggtggcctgggtcATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTCCGGCCAATCAAAAACt                          >  2:221422‑M2/31‑149 (MQ=255)                                                                                                                  cccAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCGGCTCTTCGGGATTTAACCCCATCGCTTCCGGTGCGCCCTGTACCTCTTCGTAAATTCCTACCGCCAACATGCCGTTGGAGGGCGTCCGGCAAAACAAAAAccc                         >  1:114593/1‑147 (MQ=255)                                                                                                                   ccAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTAGCAATTGAACCGCAACTCTTCCGGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGCCAATCAAAAACTcc                        >  1:832497/1‑149 (MQ=255)                                                                                                                          aCCTTTACCGTGGCCTGAGTCATTTTCTTCATCAATCTGCTCTACGAGATTTAACCACATCGCTTACAGGGCGCTCTGTAGATCTTCGTATCTTCCAAGCGAAACCATGGCGTTGGAGAGCGCACGGCCACTCAAAAACTCCTTCGata                 <  1:297125/149‑3 (MQ=255)                                                                                                                          aCCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGCCAATCAAAAACTCCATCGACa                 <  2:848440/149‑1 (MQ=255)                                                                                                                                aCCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGCCAATCAAAAACTCCATCGACAGgtagt           >  2:729822/1‑149 (MQ=255)                                                                                                                                         tGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGCCAATCAAAAACCCAATAGACGGGTCGTAAACCTGAc  >  1:416430/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                               GGCTACCGTTAACGATGTTCTGCTTGAACATACCGTAGTCATAGCGGATGCCGTAACCGCGCCCCGGCAACCCTAACGTCGCCAGAGAATCAAGGAAGCAAGCCGCCAGACGTCCCAGGCCACCGTTACCGAGGCCTGGGTCATTTTCTTCATCAATCAGCTCTTCGAGATTTAACCCCATCGCTTCCAGTGCGCCCTGTACATCTTCGTAAATTCCTAGCGACAACATGGCGTTGGAGAGCGTACGGCCAATCAAAAACTCCATCGACAGGTAGTAAACCTGAC  >  CP009273/3559449‑3559733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.