| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | CP009273 | 542,271 | IS5 (–) +4 bp | 35.0% | coding (136‑139/1668 nt) | fdrA → | putative NAD(P)‑binding acyl‑CoA synthetase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 269666 = | NA (NA) | 9 (0.510) | 8/276 | NT | 40.2% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 542274 | 13 (0.750) | coding (139/1668 nt) | fdrA | putative NAD(P)‑binding acyl‑CoA synthetase | |||||
| * | ? | CP009273 | = 270860 | NA (NA) | 5 (0.280) | 5/276 | NT | 27.2% | noncoding (320/1221 nt) | IS30 | repeat region |
| ? | CP009273 | 542271 = | 13 (0.750) | coding (136/1668 nt) | fdrA | putative NAD(P)‑binding acyl‑CoA synthetase | |||||
TTAAGGAGTTGTTATGATCCACGCCTTTATTAAAAAAGGGTGTTTTCAGGATTCGGTCAGTTTAATGATTATTTCACGAAAACTCAGCGAATCAGAAAATGTTGATGATGTTTCCGTAATGATGGGTACGCCCGCCAATAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGCCGAACGATATTTGCGTGGCAATTCGTAGCGAAGCGGCGGATGCGGGGATCGCGCAGGCGATTATGCAGCAGCTTGAAGAGGCGCTAAAACAACTGGCGCAGGG > CP009273/542123‑542419 | ttAAGGAGTGGTTATGATCCACGCCTTTATTAAAAAAGGGTGTTTTCAGGATTCGGTCAGTTTAATGATTATTTCACGAAAACTCAGCGAATCAGAAAATGTTGATGATGTTTCCGTAATGATGGGTACGCCCGCCAATAAAGCGttat < 1:302823/149‑1 (MQ=255) tAAGGAGTTGTTATGATCCACGCCTTTATTAAAAAAGGGTGTTTTCAGGATTCGGTCAGTTTAATGATTATTTCACGAAAACTCAGCGAATCAGAAAATGTTGATGATGTTTCCGTAATGATGGGTACGCCCGCCAATAAAGCGttatt < 1:292792/149‑1 (MQ=255) ggAGTTGTTATGATCCACGCCTTTATTAAAAAAGGGTGTTTTCAGGATTCGGTCAGTTTAATGATTATTTCACGAAAACTCAGCGAATCAGAAAATGTTGATGATGTTTCCGTAATGATGGGTACGCCCGCCAATAAAGCGTTATTAGa > 1:216297/1‑149 (MQ=255) ttgttATGATCCACGCCTTTATTAAAAAAGGGTGTTTTCAGGATTCGGTCAGTTTAATGATTATTTCACTAAAACTCAGCGAATCAGAAAATGTTGATGATGTTTCCGTAATGATAGGTAAGCCCGCCAATAAAGAGTTATTAGATAca > 1:99254/1‑148 (MQ=255) ttATGATCCACGCCTTTATTAAAAAAGGGTGTTTTCAGGATTCGGTCAGTTTAATGATTATTTCACGAAAACTCAGCGAATCAGAAAATGTTGATGATGTTTCCGTAATGATGGGTACGCCCGCCAATAAAGGGTTATTAGATACcaca > 1:38096/1‑149 (MQ=255) tCCACGCCTTTATTAAAAAAGGGTGTTTTCAGGATTCGGTCAGTTTAATGATTATTTCACGAAAACTCCGCGTATCAGAAAATGTTCATGATGTTTCCGTAATGATGGGTACGCCCGCCAATAAAGCGTTATTAGATACGACAGGTTTc > 2:43440/1‑149 (MQ=255) tctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcagatcagggacttgttcgcaccttccTTAGATACAACAGGATTCTgg > 1:137129‑M2/129‑149 (MQ=255) attaAAAAAGGGTGTTTTCAGGATTCGGTCAGTTTAATGATTATTTCACGAAAACTCAGCGAATCCGAAAATGTTGATGATGTTTCCGTAATGATGGGTACGCCCGCCAATAAAGCGTTATTAGggacggtgggaataaacggggagat < 1:711‑M2/149‑26 (MQ=255) aaaaaGGGTGTTTTCAGGATTCGGTCAGTTCAATTATTATTTCACGAAAACTCAGCGAATCAGAAAATGTTGATGATGTTTCCGTAATGATGGGTACGCCCGCCAATAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGAtttt < 2:135021/149‑1 (MQ=255) ttCAGGATTCGGTCAGTTTAATGATTATTTCACGAAAACTCAGCGAATCAGAAAATGTTGAGGATGTTTCCGTAATGATGGGTACGCCCCCCAATAAAGCGTTATGAGATACCACAGGTTTCTGGCATGACGACTTTAATAacgcaacg > 1:311166/1‑149 (MQ=255) aGGATTCGGTCAGTTTAATGATTATTTCACGAAAACTCAGCGAATCTGAAGATGTTGATGATGTTTCCGTAATGATGGGTACGCCCGCCAATAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGCCg > 1:205929/1‑149 (MQ=255) ggcgacggtaaggttatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGATACCACAGGTTTATGGCATGACGATTTTAATAACGCCACGCCGAACGATAtt < 1:67458‑M2/57‑1 (MQ=255) cAGTTTAATGATTATTTCACGAAAACTCAGCGAATCAGAAAATGTTGATGATGTTTCCGTAATGATGGGTACGCCCGCCAATAAAGCGTTATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcattt < 2:140356‑M2/149‑55 (MQ=255) tGATTATTTCACGAAAACTCAGCGAATCAGAAAATGTTGATGATGTTTCCGTAATGATGGGTACGCCCGCCAATAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGCTTTTAATACCCCCCCGCCGAACGATATTTGCGTGGCa > 2:66538/1‑149 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGCCGAACGATATTTGCGTGGCAATTCGTAGCGAAgcg < 2:282020‑M2/81‑1 (MQ=255) aGCGAATCAGAAAATGTGGATGATGTTTCCGTAATGCTGGGTACGCCCGCCAATAAAGCGTTATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctccc > 1:275881‑M2/1‑67 (MQ=255) accAGAAAATGTTGATGATGTTTCCGTAATGATGGGTACGCCCGCCAATAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGCCGAACGATATTTGCGTGGCAATTCGTAGCGAAGCGGCGGATGCgg < 2:216297/147‑1 (MQ=255) aTCAGAAAATGTTGATGATGTTTCCGTACTGATGGGTCCGCCTGCCAATAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGCCGAACGATATTTGCGTGGCAATTCGTAGCGAAGCGGCGGATGCgg < 1:249370/149‑1 (MQ=255) tgatgaTGTTTCCGTAATGATGGGTACGCCCGCCAATAAAGCGTTATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatca > 2:35662‑M2/1‑50 (MQ=255) tgatgaTGTTCCCGTAATGATGGGTACGCCCGCCAATAAAGCGTTATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcaggtttgagccgcttttttctcccgtaaatgccttgaatca > 2:166855‑M2/1‑50 (MQ=255) tCCGTAATGATGGGTACGCCCGCCTATAAAGCGTTATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttag < 2:232198‑M2/149‑110 (MQ=255) gTAATGATGGGTACGCCCGCCAATAAAGCGTTATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagacc < 2:5761‑M2/149‑113 (MQ=255) gatgGGTACGCCCGCCAATAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGCCGAACGATATTTGCGTGGCAATTCGTAGCGAGGCGGCGGATGCGGGGGTCGCGCAGGCGATTAAGcagcaggcag > 1:186591/1‑145 (MQ=255) gggTACGCCAGCCAGTAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGCCGAACGATATTTGCGTGTCAATTCGTAGCGAAGCGGCGGATGCGGGGATCGCGCAGGCGATTATGCAGCAGCTTGAag > 1:270572/1‑149 (MQ=255) tACGCCCGCCAATAAAGCGTTATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgcc < 2:107277‑M2/149‑124 (MQ=255) cgccaaacaattgggCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGCCGAACGATATTTGCGTGGCAATTCGTAGCGACGCGGCGGACGCGGGGATCGGGCAGGCGATTATGCAGCAGCTTGAAGAGgcg > 1:131071/15‑149 (MQ=255) gacttgttagtaccttctTTAGATACCAGCGGTTTCTGGCCTGACAATTGTAGTAACGCCGCGCCGAACGATATTTGCGTGGCAATTCGTAGCGAAGCGGCGGATGCGGGGATCGAGCAGGCGATTATGCAGCAGCTTGAAGAGGCGCt < 2:24320‑M2/131‑1 (MQ=255) ccgccAATAAAGCGTTATTAGACACCACAGGTTTCTGGCATCACGATTTTAATAACGCCACGCCGAACGATATTTGCGTGGCAATTCGTAGCGAAGCGGCGGATGCGGGGATCGCGCAGGCGATTATGCAGCAGCTTGAAGAGGCGCTa < 2:99254/149‑1 (MQ=255) tgttcgcaccttccTTAGACACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGCCGAACGATATTTGCGTGGCAATTCGTAGCGAAGCGGCGGATGCGGGGATCGCGCAGGCGATTATGCAGCAGCTTGAAGAGGCGCTaaaa < 1:108382‑M2/135‑1 (MQ=255) cAATAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGCCGAACGATATTTGCGTGGCAATTCGTAGCGAAGCGGCGGATGCGGGGATCGCGCAGGCGATTATGCAGCAGCTTGAAGAGGCGCTAAaac < 1:262012/149‑1 (MQ=255) tAAAGCGTTATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgtt > 2:146218‑M2/1‑14 (MQ=255) ttaGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGCCGAACGATATTTGCGTGGCAATTCGTAGCGAAGCGGCGGATGCGGGGATCGCGCAGGCGATTATGCAGCAGCTTGAAGAGGCGCTAAAACAACTGGCGCAggg > 2:186956/1‑149 (MQ=255) | TTAAGGAGTTGTTATGATCCACGCCTTTATTAAAAAAGGGTGTTTTCAGGATTCGGTCAGTTTAATGATTATTTCACGAAAACTCAGCGAATCAGAAAATGTTGATGATGTTTCCGTAATGATGGGTACGCCCGCCAATAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGCCGAACGATATTTGCGTGGCAATTCGTAGCGAAGCGGCGGATGCGGGGATCGCGCAGGCGATTATGCAGCAGCTTGAAGAGGCGCTAAAACAACTGGCGCAGGG > CP009273/542123‑542419 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |