New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 358674141 (0.960)3 (0.070) 3/282 6.0 7.1% coding (57/714 nt) livF leucine/isoleucine/valine transporter subunit
?CP009273 = 3586758 40 (0.990)coding (40/714 nt) livF leucine/isoleucine/valine transporter subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTTATCATCAAACACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAGCGGCGTCCCCTG  >  CP009273/3586596‑3586882
                                                                                                                                                 |                                                                                                                                             
cTTTATCATCAAACACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGGTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCCgg                                                                                                                                            >  1:541207/1‑149 (MQ=255)
  ttATCATCAAACACACTTCGCCCGCTGGAGGCACGCATGTCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACCATCTCGCCCTGGTTGATATGCAGGCTCACCGCACACCGCGCCTgggt                                                                                                                                          >  2:236110/1‑147 (MQ=255)
     tcatcaAACACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGACGGCTCACCCCATGCACCGCCTTGAtttt                                                                                                                                       >  1:156810/1‑149 (MQ=255)
       atcaAACACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGc                                                                                                                                     >  1:540586/1‑149 (MQ=255)
        tcaAACACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGcc                                                                                                                                    <  1:569848/149‑1 (MQ=255)
            acacAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGtgg                                                                                                                                >  1:467594/1‑147 (MQ=255)
            acacAATTCGCACGCTGGTGGCACGCGGATCGCCGAATAACGTGCCGAGCAAGGTGGTTTTACCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTGGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGGTTTTGctggcg                                                                                                                                >  1:218927/1‑144 (MQ=255)
               caATTCGCCCGCTGGTGGCACGCGGTCCGCCGCATAACGTGCCGAGCAAGGTGGTCGTCCCCGCCCCGTTCGCCCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTgg                                                                                                                             <  2:11808/149‑1 (MQ=255)
                        cGCTGGTAGCACGCGGATCGCCGCATACCGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTAACCTCATGAAGGCGCTGTCGTTTGCCGTAGTGGGCGCTGACt                                                                                                                    >  2:144249/1‑149 (MQ=255)
                             gtggCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGACATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTc                                                                                                               <  2:541159/149‑1 (MQ=255)
                                     cgcaccgccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGaca                                                                                                       <  2:323738/144‑1 (MQ=255)
                                      ggATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGacaa                                                                                                      <  1:203753/149‑1 (MQ=255)
                                      ggAGCGCCGCATACCGTGCCGAGCAAGGGGGTTTTCCCCGCCCCGTGCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGacaa                                                                                                      <  2:172923/149‑1 (MQ=255)
                                          cgccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGCTTGAGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATg                                                                                                  <  1:687372/149‑1 (MQ=255)
                                                    cGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCa                                                                                        <  1:162320/149‑1 (MQ=255)
                                                     gTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCAt                                                                                       <  1:648614/149‑1 (MQ=255)
                                                          gAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTAt                                                                                  >  2:605479/1‑149 (MQ=255)
                                                            gCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGc                                                                                >  2:324028/1‑149 (MQ=255)
                                                            gCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGc                                                                                >  1:958/1‑149 (MQ=255)
                                                                 gtggtTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGAGTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCAc                                                                           >  1:248088/1‑149 (MQ=255)
                                                                         ccccgccccgTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCCAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAg                                                                   >  2:640314/1‑149 (MQ=255)
                                                                           aggaccctTTCGCGACAAAAATCGTGAGAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGc                                                                 >  2:497298/5‑149 (MQ=255)
                                                                              ccccgTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTTACTTTGTCAAAGGACAACATGACTTTTTCCATCGTATGCCTCACCTAAATAGGCACg                                                              <  2:213942/149‑1 (MQ=255)
                                                                              ccccgTTCGCGCCAATCAGCGGGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACg                                                              <  1:66429/149‑1 (MQ=255)
                                                                                      gcgcCCATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCCTCTTATGCCTCACCTAAATAGGCACGGATCACGt                                                      <  1:582515/149‑1 (MQ=255)
                                                                                       cgcCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCCCGGCTcccttc                                                     >  2:142018/1‑144 (MQ=255)
                                                                                         ccAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCg                                                   <  1:605479/149‑1 (MQ=255)
                                                                                           aaTCAGCGTGACAATGTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGAATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTCAATGGGCACGGGTCACGTCCggg                                                 >  2:206144/1‑149 (MQ=255)
                                                                                                 cGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGttatta                                           <  1:250527/149‑1 (MQ=255)
                                                                                                  gTGACGATCCCGCCCTGAGTGATATGCAGGCGCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTAc                                          <  2:156810/149‑1 (MQ=255)
                                                                                                  gTGACAACCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTAc                                          <  2:171721/149‑1 (MQ=255)
                                                                                                      ccaTCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGAt                                      <  1:85208/147‑1 (MQ=255)
                                                                                                                   attgatATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTa                         <  1:491793/149‑1 (MQ=255)
                                                                                                                   attgatATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTa                         >  1:635794/1‑149 (MQ=255)
                                                                                                                   attgatACGCAGGCTCACCTCATGCAGCGCCTCGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTa                         <  1:473442/149‑1 (MQ=255)
                                                                                                                       atatGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGt                     <  2:538363/149‑1 (MQ=255)
                                                                                                                         atGCCGGCTCACCTCATGCAGCCCCTGGATTTTGCCGTATTGGGCCCTGACTTTGTCAAAGGACAACATGACTTTTTCCTTCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGttt                   <  2:153721/149‑1 (MQ=255)
                                                                                                                               gCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAgc             >  2:403754/1‑149 (MQ=255)
                                                                                                                                  cACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAgcggc          <  1:522006/149‑1 (MQ=255)
                                                                                                                                      tCATGCAGCGCCTGGATGTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAGCGGCGTcc      <  2:413445/149‑1 (MQ=255)
                                                                                                                                       cATGCAGCGCCTGGATTTCGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAGCGGCGTccc     <  1:210103/149‑1 (MQ=255)
                                                                                                                                          gCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAGCGGCGTCCCCTg  <  1:324028/149‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                             
CTTTATCATCAAACACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAGCGGCGTCCCCTG  >  CP009273/3586596‑3586882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.