New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 358674141 (0.960)3 (0.070) 3/282 6.0 7.1% coding (57/714 nt) livF leucine/isoleucine/valine transporter subunit
?CP009273 = 3586758 40 (0.990)coding (40/714 nt) livF leucine/isoleucine/valine transporter subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAGCGGCGTCCCCTGATTGACCACGTAAATTCGGTC  >  CP009273/3586611‑3586903
                                                                                                                                                   |                                                                                                                                                 
caATTCGCCCGCTGGTGGCACGCGGTCCGCCGCATAACGTGCCGAGCAAGGTGGTCGTCCCCGCCCCGTTCGCCCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTgg                                                                                                                                                  <  2:11808/149‑1 (MQ=255)
         cGCTGGTAGCACGCGGATCGCCGCATACCGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTAACCTCATGAAGGCGCTGTCGTTTGCCGTAGTGGGCGCTGACt                                                                                                                                         >  2:144249/1‑149 (MQ=255)
              gtggCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGACATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTc                                                                                                                                    <  2:541159/149‑1 (MQ=255)
                      cgcaccgccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGaca                                                                                                                            <  2:323738/144‑1 (MQ=255)
                       ggATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGacaa                                                                                                                           <  1:203753/149‑1 (MQ=255)
                       ggAGCGCCGCATACCGTGCCGAGCAAGGGGGTTTTCCCCGCCCCGTGCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGacaa                                                                                                                           <  2:172923/149‑1 (MQ=255)
                           cgccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGCTTGAGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATg                                                                                                                       <  1:687372/149‑1 (MQ=255)
                                     cGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCa                                                                                                             <  1:162320/149‑1 (MQ=255)
                                      gTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCAt                                                                                                            <  1:648614/149‑1 (MQ=255)
                                           gAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTAt                                                                                                       >  2:605479/1‑149 (MQ=255)
                                             gCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGc                                                                                                     >  2:324028/1‑149 (MQ=255)
                                             gCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGc                                                                                                     >  1:958/1‑149 (MQ=255)
                                                  gtggtTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGAGTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCAc                                                                                                >  1:248088/1‑149 (MQ=255)
                                                          ccccgccccgTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCCAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAg                                                                                        >  2:640314/1‑149 (MQ=255)
                                                            aggaccctTTCGCGACAAAAATCGTGAGAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGc                                                                                      >  2:497298/5‑149 (MQ=255)
                                                               ccccgTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTTACTTTGTCAAAGGACAACATGACTTTTTCCATCGTATGCCTCACCTAAATAGGCACg                                                                                   <  2:213942/149‑1 (MQ=255)
                                                               ccccgTTCGCGCCAATCAGCGGGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACg                                                                                   <  1:66429/149‑1 (MQ=255)
                                                                       gcgcCCATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCCTCTTATGCCTCACCTAAATAGGCACGGATCACGt                                                                           <  1:582515/149‑1 (MQ=255)
                                                                        cgcCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCCCGGCTcccttc                                                                          >  2:142018/1‑144 (MQ=255)
                                                                          ccAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCg                                                                        <  1:605479/149‑1 (MQ=255)
                                                                            aaTCAGCGTGACAATGTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGAATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTCAATGGGCACGGGTCACGTCCggg                                                                      >  2:206144/1‑149 (MQ=255)
                                                                                  cGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGttatta                                                                <  1:250527/149‑1 (MQ=255)
                                                                                   gTGACGATCCCGCCCTGAGTGATATGCAGGCGCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTAc                                                               <  2:156810/149‑1 (MQ=255)
                                                                                   gTGACAACCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTAc                                                               <  2:171721/149‑1 (MQ=255)
                                                                                       ccaTCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGAt                                                           <  1:85208/147‑1 (MQ=255)
                                                                                                    attgatATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTa                                              >  1:635794/1‑149 (MQ=255)
                                                                                                    attgatATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTa                                              <  1:491793/149‑1 (MQ=255)
                                                                                                    attgatACGCAGGCTCACCTCATGCAGCGCCTCGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTa                                              <  1:473442/149‑1 (MQ=255)
                                                                                                        atatGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGt                                          <  2:538363/149‑1 (MQ=255)
                                                                                                          atGCCGGCTCACCTCATGCAGCCCCTGGATTTTGCCGTATTGGGCCCTGACTTTGTCAAAGGACAACATGACTTTTTCCTTCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGttt                                        <  2:153721/149‑1 (MQ=255)
                                                                                                                gCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAgc                                  >  2:403754/1‑149 (MQ=255)
                                                                                                                   cACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAgcggc                               <  1:522006/149‑1 (MQ=255)
                                                                                                                       tCATGCAGCGCCTGGATGTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAGCGGCGTcc                           <  2:413445/149‑1 (MQ=255)
                                                                                                                        cATGCAGCGCCTGGATTTCGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAGCGGCGTccc                          <  1:210103/149‑1 (MQ=255)
                                                                                                                           gCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAGCGGCGTCCCCTg                       <  1:324028/149‑1 (MQ=255)
                                                                                                                                     gATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAGCGGCGTCCCCTGATTGACCACg             >  2:322741/1‑149 (MQ=255)
                                                                                                                                           gCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAGCGGCGTCCCCTGATTGACCACGTAAAtt       <  2:662987/149‑1 (MQ=255)
                                                                                                                                             cGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAGCGGCGTCCCCTGATTGACCACGTAAATTCg     >  2:9333/1‑149 (MQ=255)
                                                                                                                                              gTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCGTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAGCCGCGTCCCCTGATTGACCACGTAAATTCgg    <  2:381223/149‑1 (MQ=255)
                                                                                                                                                aGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAGCGGCGTCCCCTGATTGACCACGTAAATTCGGTc  <  1:317538/149‑1 (MQ=255)
                                                                                                                                                aGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAGCGGCGTCCCCTGATTGACCACGTAAATTCGGTc  <  1:142018/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                 
CAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATATGCAGGCTCACCTCATGCAGCGCCTGGATTTTGCCGTAGTGGGCGCTGACTTTGTCAAAGGACAACATGACTTTTTCCATCTTATGCCTCACCTAAATAGGCACGGATCACGTCCGGGTTATTACGGATCTGCTCCGGCGTACCGTTTGCCAGCGGCGTCCCCTGATTGACCACGTAAATTCGGTC  >  CP009273/3586611‑3586903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.