| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | CP009273 | 2,420,337 | Δ120 bp | intergenic (‑70/+32) | hisJ ← / ← argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 2420337 | 2420456 | 120 | 38 [0] | [0] 38 | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2420336 | 0 (0.000) | 38 (0.890) | 33/296 | 0.3 | 100% | intergenic (‑69/+152) | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| ? | CP009273 | 2420457 = | 0 (0.000) | intergenic (‑190/+31) | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit | |||||
GTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGCCGTCAGTTCAGCATCATCTT > CP009273/2420310‑2420603 | ttgcggaatcgaagcaaacgccgcaggtgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaAt < 2:409910‑M2/2‑1 (MQ=255) gtgggatcgcagcaaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTc < 2:302996‑M2/4‑1 (MQ=255) ggaatcgcagcaaacgccgcagttgcgctggagaaggccagcaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacagggttgttacacttatcgtgccataaaaATTCCa > 2:39986‑M2/144‑149 (MQ=255) ggaatcgcagcaaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaAttcac > 2:35136‑M2/144‑147 (MQ=255) atcgcagcaaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCa < 1:182521‑M2/9‑1 (MQ=255) tccaaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttccacttatcgtgccataaaaATTCCATCAGGtaa < 1:481456‑M2/14‑2 (MQ=255) agcaaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaAGTCCATAAGGtaa > 1:673087‑M2/136‑148 (MQ=255) gaaaccccgcagttgcgctggagaaggccagaaccagagagagcgatagcagcagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAg < 2:330420‑M2/16‑1 (MQ=255) gccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctccactgacagtccttttatagggaatatttactggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTcc < 2:602896‑M2/21‑1 (MQ=255) cgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCa > 1:694389‑M2/127‑149 (MQ=255) gttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGa < 1:233871‑M2/27‑1 (MQ=255) gcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGt > 1:626087‑M2/120‑149 (MQ=255) aaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCAc < 1:576907‑M2/39‑1 (MQ=255) cgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGaaa > 1:70203‑M2/91‑149 (MQ=255) tagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATAc < 2:694389‑M2/62‑1 (MQ=255) ccccagttttttcataatgtcctcaattgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACttt < 2:632301‑M2/65‑1 (MQ=255) accagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGCAATAAtttt > 2:541467‑M2/84‑149 (MQ=255) cagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTc > 1:476092‑M2/82‑149 (MQ=255) cagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTc < 2:694997‑M2/68‑1 (MQ=255) ttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCt > 1:146045‑M2/75‑149 (MQ=255) ttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATAATTTTTCCCCctct > 1:82801‑M2/75‑149 (MQ=255) caactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGcc < 1:428723‑M2/88‑1 (MQ=255) gacggtttttttatagggaatatttccaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCt < 2:546292‑M2/93‑1 (MQ=255) tctttttttagggaatttttacaggtttgttacacctttcgtgccataaaaATTCCATTAGGTAAAGCTTCCCCGCGACGTAACAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGc < 2:225920‑M2/98‑1 (MQ=255) tttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAg > 1:369181‑M2/50‑149 (MQ=255) atagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGCCGTAGGTCCCTTACTGACGCAGCTCGc > 2:603710‑M2/45‑149 (MQ=255) ggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCCAg > 2:463478‑M2/41‑149 (MQ=255) gaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAgc < 2:154252‑M2/110‑1 (MQ=255) aatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAgcg > 2:110292‑M2/39‑149 (MQ=255) aatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTGTTCGTAGGTGCCGTCCTGACTCAGCTCGCCAAgcg > 1:316571‑M2/39‑149 (MQ=255) gggcggggttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTa < 2:517337‑M2/116‑1 (MQ=255) caggtttgttacacttatcgtgccataaaaAGTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTg < 1:138878‑M2/119‑1 (MQ=255) ttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAATTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGc > 1:201995‑M2/23‑149 (MQ=255) tcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGCCGTCAGTTc < 1:39986‑M2/136‑1 (MQ=255) gtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGCCGTCAGTTCAg < 2:476092‑M2/138‑1 (MQ=255) cataaaaATTCCATCAGGTAAAGCTTCCAAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGCCATCAGTTCagcagc < 2:602037‑M2/142‑3 (MQ=255) aaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGCCGTCAGTTCAGCatcatc < 1:88003‑M2/145‑1 (MQ=255) aaATTCCGTCTGGTAAAGCTGCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGCCGTCAGTTCAGCATCATCtt < 2:53794‑M2/147‑1 (MQ=255) | GTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGCCGTCAGTTCAGCATCATCTT > CP009273/2420310‑2420603 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |