Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	CP009273	2,420,337	Δ120 bp	intergenic (‑70/+32)	hisJ ← / ← argT	histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009273	2420337	2420456	120	38 [0]	[0] 38	hisJ/argT	histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2420336	0 (0.000)	38 (0.890)	33/296	0.3	100%	intergenic (‑69/+152)	hisJ/argT	histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit
	?	CP009273	2420457 =	0 (0.000)					intergenic (‑190/+31)	hisJ/argT	histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit

TTGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGA  >  CP009273/2420190‑2420483                                                                                                                                                   |                                                                                                                                                    ttGCGGAATCGAAGCAAACGCCGCAGGTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAat                                                                                                                                                   <  2:409910‑M1/149‑3 (MQ=255)   gtgggatcgcaGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattc                                                                                                                                                 <  2:302996‑M1/144‑5 (MQ=255)     ggAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGCACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGGTTGTTACACTTATCGTGCCATAAAAattcca                                                                                                                                               >  2:39986‑M1/1‑143 (MQ=255)     ggAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattcac                                                                                                                                               >  2:35136‑M1/1‑143 (MQ=255)        aTCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatca                                                                                                                                            <  1:182521‑M1/149‑10 (MQ=255)             tccaaaCGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTCCACTTATCGTGCCATAAAAattccatcaggtaa                                                                                                                                       <  1:481456‑M1/147‑15 (MQ=255)             agcaAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAagtccataaggtaa                                                                                                                                       >  1:673087‑M1/1‑135 (MQ=255)               gaaacCCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCAGCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaag                                                                                                                                     <  2:330420‑M1/148‑17 (MQ=255)                    gccgcAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCCACTGACAGTCCTTTTATAGGGAATATTTACTGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcc                                                                                                                                <  2:602896‑M1/149‑22 (MQ=255)                      cgcAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttccca                                                                                                                              >  1:694389‑M1/1‑126 (MQ=255)                          gTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcga                                                                                                                          <  1:233871‑M1/149‑28 (MQ=255)                             gcgcTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgt                                                                                                                       >  1:626087‑M1/1‑119 (MQ=255)                                      aaGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcac                                                                                                              <  1:576907‑M1/149‑40 (MQ=255)                                                          cGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaa                                                                                          >  1:70203‑M1/1‑90 (MQ=255)                                                             tAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatac                                                                                       <  2:694389‑M1/149‑63 (MQ=255)                                                                ccccagTTTTTTCATAATGTCCTCAATTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatacttt                                                                                    <  2:632301‑M1/147‑66 (MQ=255)                                                                 aCCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgcaataatttt                                                                                   >  2:541467‑M1/1‑83 (MQ=255)                                                                   cAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttc                                                                                 >  1:476092‑M1/1‑81 (MQ=255)                                                                   cAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttc                                                                                 <  2:694997‑M1/149‑69 (MQ=255)                                                                          ttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatct                                                                          >  1:146045‑M1/1‑74 (MQ=255)                                                                          ttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaataatttttccccctct                                                                          >  1:82801‑M1/1‑74 (MQ=255)                                                                                       cAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgcc                                                             <  1:428723‑M1/149‑89 (MQ=255)                                                                                            gACGGTTTTTTTATAGGGAATATTTCCAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcct                                                        <  2:546292‑M1/149‑94 (MQ=255)                                                                                                 tCTTTTTTTAGGGAATTTTTACAGGTTTGTTACACCTTTCGTGCCATAAAAattccattaggtaaagcttccccgcgacgtaacagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgc                                                   <  2:225920‑M1/149‑99 (MQ=255)                                                                                                   tttttATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcag                                                 >  1:369181‑M1/1‑49 (MQ=255)                                                                                                        ataGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgccgtaggtcccttactgacgcagctcgc                                            >  2:603710‑M1/1‑44 (MQ=255)                                                                                                            ggAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgcccag                                        >  2:463478‑M1/1‑40 (MQ=255)                                                                                                             gAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagc                                       <  2:154252‑M1/149‑111 (MQ=255)                                                                                                              aaTATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcg                                      >  2:110292‑M1/1‑38 (MQ=255)                                                                                                              aaTATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatctgttcgtaggtgccgtcctgactcagctcgccaagcg                                      >  1:316571‑M1/1‑38 (MQ=255)                                                                                                                   gggcggggttgttacactTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgcctta                                 <  2:517337‑M1/141‑117 (MQ=255)                                                                                                                      cAGGTTTGTTACACTTATCGTGCCATAAAAagtccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgccttattg                              <  1:138878‑M1/149‑120 (MQ=255)                                                                                                                              ttACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaattcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgccttattgaaggcagc                      >  1:201995‑M1/1‑22 (MQ=255)                                                                                                                                       tCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgccttattgaaggcagccgtcagttc             <  1:39986‑M1/149‑137 (MQ=255)                                                                                                                                         gTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgccttattgaaggcagccgtcagttcag           <  2:476092‑M1/149‑139 (MQ=255)                                                                                                                                             cATAAAAattccatcaggtaaagcttccaagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgccttattgaaggcagccatcagttcagcagc       <  2:602037‑M1/149‑143 (MQ=255)                                                                                                                                                aaaaattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgccttattgaaggcagccgtcagttcagcatcatc    <  1:88003‑M1/149‑146 (MQ=255)                                                                                                                                                  aaattccgtctggtaaagctgcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgccttattgaaggcagccgtcagttcagcatcatctt  <  2:53794‑M1/149‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TTGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGA  >  CP009273/2420190‑2420483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑