New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1391496	NA (NA)	46 (0.690)	38/290	0.9	97.9%	intergenic (+147/‑126)	insH1/ynaJ	IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein
	?	CP009273	1539170 =	1 (0.010)					pseudogene (802/951 nt)	yddK	pseudogene, leucine‑rich protein; putative glycoportein

AAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCta‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1391349‑1391496 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCCAGCAG  >  CP009273/1539170‑1539317                                                                                                                                                                                                                                                                                                          AAAACTGGGGATAACGCCTTAAATGGTCAAGAAACGGTGTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT                                                                                                                                                     <  2:777751/149‑1 AAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT                                                                                                                                                     >  2:96666/1‑149  AAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATACAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA                                                                                                                                                    >  2:230895/1‑149  AAACTGGGGATAACCCCTTAAATGGCCAAGCAACCGTGTAATTAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA                                                                                                                                                    <  2:27422/149‑1    ACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT                                                                                                                                                     <  1:286609/146‑1    ACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT                                                                                                                                                     <  1:486567/146‑1    ACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATCCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT                                                                                                                                                     >  1:2231/1‑146     CTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA                                                                                                                                                    >  1:658041/1‑146          GATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGTGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTT                                                                                                                                            >  2:260085/1‑149          GATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATAACTGAATCAGCGGAGAAGAATTTTCCCGGTGATTGACTCCTTACCTAcggcgctc                                                                                                                                            >  2:240489/1‑141                GCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAA                                                                                                                                         >  1:1051637/1‑146                     AAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGGTTAATGTCT                                                                                                                                    >  1:297647/1‑146                               GAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGCGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCA                                                                                                                          <  1:150783/146‑1                                  ACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTT                                                                                                                    <  2:1066517/149‑1                                     gtcttatgcatCTGATTCCAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAACGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTT                                                                                                                    <  1:729572/135‑1                                      TCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTG                                                                                                                   <  1:664688/146‑1                                         AAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAG                                                                                                             >  2:1106479/1‑149                                             AGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGA                                                                                                            <  1:850501/146‑1                                               GCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAGCAGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATT                                                                                                       >  2:790688/1‑149                                                 TGATTCAAGGCATGTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTATGAACATTGCAGAAGTTGCTATAGAATATTTT                                                                                                     >  2:783080/1‑149                                                      CAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCATCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTT                                                                                                <  2:39591/149‑1                                                        AGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGGCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCA                                                                                              >  2:295141/1‑149                                                         GGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTT                                                                                                >  1:401376/1‑146                                                               TACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAA                                                                                          <  1:904967/146‑1                                                                ACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAG                                                                                         >  1:380795/1‑146                                                                    GAGAAAAAATCGGCTCAAACATGAAGAAATGAAATTGCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTG                                                                                  >  2:619494/1‑149                                                                     AGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGT                                                                                 <  2:1010573/149‑1                                                                      GAAAACATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTT                                                                                <  2:486866/149‑1                                                                      GAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTT                                                                                <  2:361157/149‑1                                                                        AAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGT                                                                              <  2:32271/149‑1                                                                          AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTA                                                                            <  2:81185/149‑1                                                                               GGCTCAAACAGGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAAT                                                                          <  1:205394/146‑1                                                                                GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGT                                                                      <  2:10552/149‑1                                                                                GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGT                                                                      <  2:10525/149‑1                                                                                  TCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAATTTGTTGTTAATAAGTAA                                                                    >  2:684333/1‑149                                                                                     AACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGT                                                                 >  2:468136/1‑149                                                                                     AACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAA                                                                    <  1:418959/146‑1                                                                                            AGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTC                                                             >  1:628583/1‑146                                                                                             GAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGT                                                         >  2:1499/1‑149                                                                                             GAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCA                                                            >  1:262187/1‑146                                                                                                ATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGG                                                      <  2:445892/149‑1                                                                                                      TGACTGAGTCAGCCGAGAAGGATTTCCCCGCTTATTCGCACCTTCCCTAGCATCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAA                                                   <  1:954663/146‑1                                                                                                        ACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCGATCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAG                                              <  2:214037/149‑1                                                                                                             GTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAATGTATTCAAGTTGGGATATAAGTC                                            <  1:711338/146‑1                                                                                                             GTCAGCCGAGAAGAATTTCCCCGCTTATCCGCACACTACCTAGGATCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATT                                         <  2:317760/149‑1                                                                                                                  CCGAGAAGATTTTCCCCGCTTATGCGCACCGTCCCTATCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGT                                       <  1:718567/146‑1                                                                                                                  CCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAACATGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGT                                       <  1:607585/146‑1                                                                                                                  CCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGT                                       <  1:673151/146‑1                                                                                                                                CCCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGT                         >  1:658188/1‑146                                                                                                                                 CCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAATTTGTTAGTT                        >  1:676276/1‑146                                                                                                                                 CCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTAT                     >  2:195760/1‑149                                                                                                                                 CCGCTTATTCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTT                        >  1:212858/1‑146                                                                                                                                         TCGCACCTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGG                <  1:421203/146‑1                                                                                                                                               CTTCCCTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATGATGGGCTAGCTCC       >  2:348094/1‑149                                                                                                                                                    CTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCCAGCAG  <  2:287080/149‑1                                                                                                                                                                                                                                                                                                          AAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCta‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1391349‑1391496 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCCAGCAG  >  CP009273/1539170‑1539317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.