New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 1068445 = | 94 (1.210) | 4 (0.050) | 4/266 | 11.2 | 4.0% | noncoding (92/98 nt) | RIP92 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP92 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
? | NC_000913 | 4027382 = | 103 (1.400) | noncoding (62/281 nt) | REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
GCGCGATTTTACTCAATGCGTTGTTAAGCAGAAAGTTGGTTGACGTTCCACCGCCAGAAGTTGTTCATCAGGAGCCATAAACAGAAAACCGCCGGGGTTACCGGCGGTGCAGATTGTTGACAACGTACGCATTGTTCATGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1068590‑1068445 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATG > NC_000913/4027382‑4027517 GCGCGATTTTACTCAATGCGTTGTTAAGCAGAAAGTTGGTTGACGTTCCACCGCCAGAAGTTGTTCATCAGGAGCCATAAACAGAAAACCGCCGGGGTTACCGGCGGTGCAGATTGTTGACAACGTACGCATTGTTCATGCCG > 1:332794/1‑143 GCGCGATTTTACTCAATGCGTTGTTAAGCAGAAAGTTGGTTGACGTTCCACCGCCAGAAGTTGTTCATCAGGAGCCATAAACAGAAAACCGCCGGGGTTACCGGCGGTGCAGATTGTTGACAACGTACGCATTCGTCATGCCG > 2:424719/1‑143 gccATTTTACTCAATGCGTTGTTAAGCAGAAAGTTGGTTGACGTTCCACCGCCAGAAGTTGTTCATCAGGAGCCATAAACAGAAAACCGCCGGGGTTACCGGCGGTGCAGATTGTTGACAACGTACGCATTGTTCATGCCGGA < 2:34609/140‑1 TAAACAGAAAACCGCCGGGGTTACCGGCGGTGCAGATTGTTGACAACGTACGCATTGTTCATGCCGGATAAGGCGTTTACGCCGCATCCG < 1:1207491/90‑1 TAAACAGAAAACCGCCGGGGTTACCGGCGGTGCAGATTGTTGACAACGTACGCATTGTTCATGCCGGATAAGGCGTTTACGCCGCATCCG > 2:1207491/1‑90 accttATGCCGGATAAGGCGGTTACTCTGCATCCGGCAATTGGTGCATAATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTG < 2:320664/138‑1 gtcTGCCGGACAGCGCCTTTACGCCGCATCCCGCATGTGGTGCGTGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCAT < 1:748821/140‑1 GCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATG > 2:1259429/1‑143 GCGCGATTTTACTCAATGCGTTGTTAAGCAGAAAGTTGGTTGACGTTCCACCGCCAGAAGTTGTTCATCAGGAGCCATAAACAGAAAACCGCCGGGGTTACCGGCGGTGCAGATTGTTGACAACGTACGCATTGTTCATGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1068590‑1068445 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATG > NC_000913/4027382‑4027517 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |