New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3324949	53 (0.850)	5 (0.090)	5/262	7.8	9.2%	intergenic (‑40/+50)	folP/ftsH	7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
	?	NC_000913	= 3324957	49 (0.850)					intergenic (‑48/+42)	folP/ftsH	7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCCGAAAAGGAATCAGGCGTGACGTTGAGGATCCCCATTACGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTTCATCAACCGGACGAGGAGCCTTTGGACTACCAT  >  NC_000913/3324820‑3325087                                                                                                                                  |                                                                                                                                           aTCCGAAAAGGAAGCAGGCGTGACGTTGCGGATCCCCATTACGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCggg                                                                                                                               <  1:780294/143‑1 (MQ=255)   ccGAAAAGGAATCAGGCGTGACGTTGAGGATCCCCATTACGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGGGCGTGCTCCGGGGt                                                                                                                             <  1:645758/143‑1 (MQ=255)    ataaaaGTAATCAGGCGGGACGTTGAGGAGCCCCATTCCGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGtt                                                                                                                            <  1:616811/141‑1 (MQ=255)     gAAAAGGAATCAGGCGTGACGTTGAGGATCCCCATTACGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGACGTTATCCCTGGTATGAATTGGTAAGACAAAACCCCGGCGCACGcccgtgggatt                                                                                                                           >  1:188961/1‑135 (MQ=255)     gAAAAGGAATCAGGCGTGACGTTGAGGATCCCCATTACGTGAGGATGGC‑AAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCTCCGGCGtttt                                                                                                                          <  2:444297/143‑1 (MQ=255)      gaagggAGTCGGGCGGGACGTTGAGGATCCCCATGACGTGAGGATGGCTAAGGGCCAGTGAAGGACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGtttt                                                                                                                          <  2:423493/139‑1 (MQ=255)        gaGGAATCCGGCGTGACGTTGAGGATCCCCATTACGTGAGGATGGATAAGTTTCTGTGAAGTCCCCTGGCTAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCg                                                                                                                        <  2:70801/142‑1 (MQ=255)        aaGGAATCAGGCGTGACGTTGAGGATCCCCATTACGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCg                                                                                                                        <  2:511064/143‑1 (MQ=255)           gAATCAGGCGTGACGTTGAGGATCCCCATTACGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGGTTTCggga                                                                                                                     >  2:953660/1‑141 (MQ=255)               cAGGCGTGACGTTGAGGATCCCCATTACGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACaaa                                                                                                                 <  2:344948/143‑1 (MQ=255)                aGGCGTGACGTTGAGGATCCCCATTACGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGAGGTTATCCCTGGTATGAATTGATAAGAAAAAACGCCGGGGGGCGCCCCGGGGGTTGCGGTagagag                                                                                                                >  1:189681/1‑138 (MQ=255)                   cGTGACGTTGAGGATCCCCATTACGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACa                                                                                                             <  1:611195/143‑1 (MQ=255)                      ggcggtGAGGATCCCCATGGCGTGAGGATGGCTAAGGTCCAGTGAAGGACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTc                                                                                                          <  1:336069/138‑1 (MQ=255)                        ggtggAGGATCCCCGTTACGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGGGGCCGCCCCAGGGTTTTCGGTACAAATACAGTCAt                                                                                                        <  2:80348/139‑1 (MQ=255)                        cGTTGAGGATCCCCATGACGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCAt                                                                                                        <  2:375085/143‑1 (MQ=255)                          ttGAGGATCCCCATTACGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATCCAGTCATCt                                                                                                      >  1:88932/1‑143 (MQ=255)                               aaTCCCTATTACGTGAGGATGGCTAAGGTCCAGTGAAGTAGCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGc                                                                                                 <  1:350475/142‑1 (MQ=255)                                 tCCCCATTACGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCgg                                                                                               <  1:608729/143‑1 (MQ=255)                                 tCCCCATTACGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGAGGCgg                                                                                               >  2:148705/1‑143 (MQ=255)                                   cccATTACGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGAGAAGAAACAACCGCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGa                                                                                             >  2:379862/1‑143 (MQ=255)                                     cATTACGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAac                                                                                           <  2:995348/143‑1 (MQ=255)                                         aCGTGAGGCTGGCTTAGGTCCAGTGAAGTACCCTGGGCAGAGAGTTTCATGATGTTAGCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAacttac                                                                                       <  2:271365/143‑1 (MQ=255)                                            tGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAAACCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTg                                                                                    >  2:381310/1‑143 (MQ=255)                                              aGGATGGCTAAGTTCCAGTGAAGTACTCTGGGCAAAGGGTTTCATGATGTTATCCCTGGCATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTc                                                                                  <  2:539452/143‑1 (MQ=255)                                                  tGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAAGCGCTAAGAAAAAACCCCGGAGCACGCCCCGGGGCTTTCGGTACAAATACAGTCATCTGATGCGGGGAATTCCTTGTCGGCt                                                                              >  2:183602/1‑143 (MQ=255)                                                   ggCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTa                                                                             <  2:388794/143‑1 (MQ=255)                                                    gCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTaa                                                                            <  2:859449/143‑1 (MQ=255)                                                           gccacttaaGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAGATACAGTCATCTGATGCGGGATCTTACTTGTCGCCTAACTGctct                                                                     <  2:615206/136‑1 (MQ=255)                                                             cAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCAGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTCACTGCTCTGa                                                                   >  1:572414/1‑143 (MQ=255)                                                                tttattaaccTGTGCAAAGACTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACAt                                                                <  1:1073090/135‑1 (MQ=255)                                                                        ccTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTAc                                                        >  1:844752/1‑143 (MQ=255)                                                                          tGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTAccc                                                      <  1:540109/143‑1 (MQ=255)                                                                              cAATGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCACGGAGCACGCCCCGGAGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGt                                                  >  2:180219/1‑143 (MQ=255)                                                                                 agagTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGCCATGGTGTTACTCGGGTTCg                                               >  1:942121/1‑143 (MQ=255)                                                                                     tttCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGt                                           >  1:768012/1‑143 (MQ=255)                                                                                            cccttATCCCTGCTATGCATTGATCAGGAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGt                                    <  2:177802/140‑1 (MQ=255)                                                                                              ggtATCCCCGGTATGAAGTGATAAGAAAAAACCCCGGGGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTtc                                  <  2:369240/141‑1 (MQ=255)                                                                                                tagcctgggTATGAAGTGATAAGAAAAAACCCCGGAGCACGCCCCGGTGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTtcat                                <  2:1005678/136‑1 (MQ=255)                                                                                                tATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTtcat                                <  1:949262/143‑1 (MQ=255)                                                                                                 atcgcgggcaggagttGATGAGAAAAAGCCGCGGAGCACGCCTAGGGGTTTTAGTATCAAATACGGGCATCGGATGCGGGAAGTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTtcatc                               <  2:484990/129‑1 (MQ=255)                                                                                                   cccTGGTATGAATTGATAAGAAAAAACCCCGGAGCCCGCCCCGGCTTTTCCGCTGCAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTTCATCaa                             <  1:246360/143‑1 (MQ=255)                                                                                                     cTGGTATGAATTGATACGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGAGGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGCTCGGCGTACGGGGGTCATCAAcc                           >  2:705619/1‑143 (MQ=255)                                                                                                           tacaTTGATTAGACAAAACCGCTGAGCTCGCCCTGGGTTTTTCTGTACAATTACAGTCATCTGATGCGTGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCTGTTCATCAACCGGACga                     <  2:406044/140‑1 (MQ=255)                                                                                                           tGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTTCATCAACCGGACga                     >  1:360516/1‑143 (MQ=255)                                                                                                            gAATTGATAAGAAAAAACCCCGGCGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTAGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTTCATCAACCGGACgag                    >  1:1040097/1‑143 (MQ=255)                                                                                                            gAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACCAATAAAGTCCCGTCAGTCGGGAAATTAATTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTTCATCAACCGGACgag                    >  1:459884/1‑143 (MQ=255)                                                                                                             aaTTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTTCATCAACCGGACgagg                   >  1:466661/1‑143 (MQ=255)                                                                                                                  aTAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTTCATCAACCGGACGCGGCGCCt              >  2:369870/1‑143 (MQ=255)                                                                                                                  aTAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATAAAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTTCATCAACCGGACGAGGAGACt              >  1:365384/1‑143 (MQ=255)                                                                                                                    aaGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTTCATCAACCGGACGGGGAGCCttt            >  1:476808/1‑143 (MQ=255)                                                                                                                      gAAAAAACCCCAGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTTCATCAACCGGACGAGGAGCCTTTgg          >  2:912581/1‑143 (MQ=255)                                                                                                                       aagtcggcccGGCGCTCGCCCCTGAGGTTTCGGTACACAGACAGTCATCTGATGCGGGAACTTACTGGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTTCATCAACCGGACGAGGAGCCTTTGGa         <  2:113616/136‑1 (MQ=255)                                                                                                                       aaaaaaCCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTTCATCAACCGGACGAGGAGCCTTTGGa         <  1:630592/143‑1 (MQ=255)                                                                                                                              cccGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTTCATCAACCGGACGAGGAGCCTTTGGACTACCAt  >  2:961268/1‑143 (MQ=255)                                                                                                                                  |                                                                                                                                           ATCCGAAAAGGAATCAGGCGTGACGTTGAGGATCCCCATTACGTGAGGATGGCTAAGGTCCAGTGAAGTACCCTGGGCAAAGAGTTTCATGATGTTATCCCTGGTATGAATTGATAAGAAAAAACCCCGGAGCACGCCCCGGGGTTTTCGGTACAAATACAGTCATCTGATGCGGGAACTTACTTGTCGCCTAACTGCTCTGACATGGTGTTACCCGGGTTCGGCGTACGCGGTTCATCAACCGGACGAGGAGCCTTTGGACTACCAT  >  NC_000913/3324820‑3325087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.