| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,951,734 | Δ326 bp | pseudogene (194‑519/663 nt) | ilvG → | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3951734 | 3952059 | 326 | 48 [0] | [1] 48 | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3951733 | 0 (0.000) | 43 (1.090) | 36/268 | 0.1 | 100% | pseudogene (193/663 nt) | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted |
| ? | NC_000913 | 3952060 = | 0 (0.000) | pseudogene (520/663 nt) | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted | |||||
CGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCGTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCA > NC_000913/3951591‑3951874 | cgtccctcctggtGACGCTATCTACGCGCCGTTGTTGTTAAGACAACTGTCTGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGCGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAA < 2:102544‑M1/137‑1 (MQ=255) ccATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgac > 1:629049‑M1/1‑140 (MQ=255) agctcggttACGTTATCTTCGCGCCGTTGTTGTTAAAACAATTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCTCACACTCGCCCGGAAAgacca < 2:44480‑M1/139‑6 (MQ=255) gacgtcatctacgCGCCGTTGTTGTTAAAACAACTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaag < 2:546499‑M1/137‑14 (MQ=255) gCTATCTACGCGCCGTTGTTGTTAAAACAAATGTC‑GATCAGGTAATCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATAGCCCACACTCGCCCGGAAAgaccaggttgaagcgg > 2:156060‑M1/1‑127 (MQ=255) tCTACGAGCCCTCGTGGTTCGGACTACGGTCGGAGC‑GTAAGCCTGCGGAGTGCGGCGTGACCACAGCTGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcact < 2:587170‑M1/143‑21 (MQ=255) aCGCGCCGTTGTTGTTAAAACAACTGTCGGATC‑TTAACGCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcga < 1:686403‑M1/143‑24 (MQ=255) cgcgCCGTTGTTGTTAAAACAACTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgac < 2:192084‑M1/143‑25 (MQ=255) cgcCGTTGTTGTTAAAACAACTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacac > 1:197299‑M1/1‑117 (MQ=255) cGTTGTTGTTAAAACAACTGTCGGATC‑GTAAACCCGCGGATTGCGTCGTGACCACAGATGTGGGGCACCACCAGATGCGGGCTGCGCAGCCCATCGCCCACACTCGCCCGGAACgaccaggctgaagcggcactcgacacccc > 2:698421‑M1/1‑114 (MQ=255) tgttAAAACAACTGTCGGATC‑GTAAACCTGCGGTTTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAggccaggttgaagcgggacacgacaccatggtgaa > 2:300116‑M1/1‑108 (MQ=255) ttAAAACAACTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcacacgacaccatgctgaaca > 2:543952‑M1/1‑106 (MQ=255) aacaacTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgg > 1:184265‑M1/1‑102 (MQ=255) acTGTCGGAAC‑GAAAACCGGCAGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGAGAAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatggg < 1:356760‑M1/143‑46 (MQ=255) gATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACGAGATGTGGGCTGCGCAGCACCTCCCCCACCTTTCCCTGGATAgaccaggttgaagcggcactcgacaccatgctgagcagtgatgggccctacc > 1:454009‑M1/1‑91 (MQ=255) aTC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccagacct > 2:219925‑M1/1‑90 (MQ=255) ccTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACCCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatg < 2:325573‑M1/143‑62 (MQ=255) gtcgtGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCGCACTCGCCCGGAAAgaccaggttgacgcggcactcggcaccatgctgaacggtggtgggccctgccggcttcctgtttgcgtcggcg > 1:37332‑M1/1‑70 (MQ=255) tccgcagatgTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccagtttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttg < 2:151313‑M1/139‑80 (MQ=255) cacaGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgacccggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgcg > 2:217877‑M1/1‑62 (MQ=255) cacaGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccctgctgcacagtgatcggccatacctgcttcatgtctcaatagaccaacttgag > 1:3775‑M1/1‑62 (MQ=255) gtgGGGCAGTACCAGATGTGGGCTGCGCAGCACATCGCCCACCCTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtct < 2:364122‑M1/143‑89 (MQ=255) gggCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccagggtgaagcggcactcgacaccatgctgaacagtgatgggccctacctgcgtcatgtctcaatcggcgaacctggggacggcgggc > 1:581188‑M1/1‑52 (MQ=255) gggCAGCACCAGATGTGGGCTGCGCAGCACAGCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggc < 2:30687‑M1/143‑92 (MQ=255) agcaCCAGATGTGGGCTGCGCAGCACCTCGAACACATGCGCTCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgct < 1:492420‑M1/143‑96 (MQ=255) agcaCCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgcagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtccgcccgcc > 2:82013‑M1/1‑48 (MQ=255) aCCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgtcaccatgctgaacagtgatgggccatacctgcttcctgtctcaatcgacggacttgagaacgtctggccgctggt > 2:362662‑M1/1‑45 (MQ=255) aCCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaccttgaggacgtctggccgctggt > 1:639636‑M1/1‑45 (MQ=255) aCCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggt < 2:197299‑M1/143‑99 (MQ=255) gATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccg > 1:642365‑M1/1‑41 (MQ=255) catGTGGGCTGCGCAGCACCTCGCCCACACCCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccg < 1:298363‑M1/142‑103 (MQ=255) gtgGGCTGCCCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcct < 1:502694‑M1/143‑106 (MQ=255) ggCTGCTCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccattctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgataacgtctggccgctggtgccgcctggc < 2:381376‑M1/143‑109 (MQ=255) ggCTGCGCAGCACAGCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaatttgagaacgtctggccgctggtgccgcctggc < 2:380699‑M1/143‑109 (MQ=255) tGCGCAGCACGTCGCCCACCCTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagagatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgcc < 2:261800‑M1/143‑112 (MQ=255) gcgcAGCACATCGCCCACACTCGCCCGGAAGgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggcgccaggcggcacca < 2:2545‑M1/143‑113 (MQ=255) cgcAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgccttgcgcccg > 1:281324‑M1/1‑30 (MQ=255) cacaTCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgctccatgtctcaatcgacgaacttgagaacgtctggccgctggcgccacctcgcgcccggaatt > 2:183042‑M1/1‑25 (MQ=255) aTCGCCCCCACCCGCCCGGCAAcaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatcccttcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattcag < 1:246861‑M1/143‑122 (MQ=255) tCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattcaga > 1:444154‑M1/1‑21 (MQ=255) cacTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattcagaaatgttg < 1:579508‑M1/143‑130 (MQ=255) cgcgcCCGGAAAcaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcgtcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattcagaaatgttgga < 1:144396‑M1/141‑132 (MQ=255) cTCGCCCGGAAAgaccacgttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaccgtctggccgctggtgccgcctggcgccagtaattcagaaatgttgga < 1:10925‑M1/143‑132 (MQ=255) cTCGACCGGCAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattcagaaatgttgga < 1:236413‑M1/143‑132 (MQ=255) ccGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattcagaaatgttggagaaat > 1:423933‑M1/1‑7 (MQ=255) gAAAgaccaggttgaagcggcactcgacaccatgctgaacagcgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattcagaaatgttggagaaattat < 2:20609‑M1/143‑140 (MQ=255) aaagaccacgttgaagcggcactcgacaccctgctgaacagtgatcggccatacctgcttcatgtctcaaccgacgaacttgagcacgtctggccgctggtgccgcctggcgccagtaattcagaaatgttggagaaattatc < 1:156060‑M1/143‑141 (MQ=255) aagaccaggttgaagcggcactcgacacaatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattcagaagtgttggagagattatca > 1:537229‑M1/1‑2 (MQ=255) | CGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCGTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCA > NC_000913/3951591‑3951874 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |