| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,951,734 | Δ326 bp | pseudogene (194‑519/663 nt) | ilvG → | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3951734 | 3952059 | 326 | 48 [0] | [1] 48 | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3951733 | 0 (0.000) | 43 (1.090) | 36/268 | 0.1 | 100% | pseudogene (193/663 nt) | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted |
| ? | NC_000913 | 3952060 = | 0 (0.000) | pseudogene (520/663 nt) | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted | |||||
ACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACCCTTACTGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCACCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAATTATCA > NC_000913/3951920‑3952200 | ccatcccggtgacgctatctacgcgccgttgttgttaaaacaactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGAc > 1:629049‑M2/141‑143 (MQ=255) agctcggttacgttatcttcgcgccgttgttgttaaaacaattgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgctcacactcgcccggaaaGACCa < 2:44480‑M2/5‑1 (MQ=255) gacgtcatctacgcgccgttgttgttaaaacaactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAg < 2:546499‑M2/13‑1 (MQ=255) gctatctacgcgccgttgttgttaaaacaaatgtcgatcaggtaatctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatagcccacactcgcccggaaaGACCAGGTTGAAGCgg > 2:156060‑M2/128‑143 (MQ=255) tctacgagccctcgtggttcggactacggtcggagcgtaagcctgcggagtgcggcgtgaccacagctgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACt < 2:587170‑M2/20‑1 (MQ=255) acgcgccgttgttgttaaaacaactgtcggatcttaacgctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGa < 1:686403‑M2/23‑1 (MQ=255) cgcgccgttgttgttaaaacaactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGac < 2:192084‑M2/24‑1 (MQ=255) cgccgttgttgttaaaacaactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGacac > 1:197299‑M2/118‑143 (MQ=255) cgttgttgttaaaacaactgtcggatcgtaaacccgcggattgcgtcgtgaccacagatgtggggcaccaccagatgcgggctgcgcagcccatcgcccacactcgcccggaacGACCAGGCTGAAGCGGCACTCGAcacccc > 2:698421‑M2/115‑141 (MQ=255) tgttaaaacaactgtcggatcgtaaacctgcggtttgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGGCCAGGTTGAAGCGGGACACGACACCATGGTGaa > 2:300116‑M2/109‑143 (MQ=255) ttaaaacaactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACACGACACCATGCTGAACa > 2:543952‑M2/107‑143 (MQ=255) aacaactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGtgg > 1:184265‑M2/103‑142 (MQ=255) actgtcggaacgaaaaccggcagattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgagaagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATggg < 1:356760‑M2/45‑1 (MQ=255) gatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcacgagatgtgggctgcgcagcacctcccccacctttccctggataGACCAGGTTGAAGCGGCACTCGACACCATGCTGAGCAGTGATGGGCCCTAcc > 1:454009‑M2/92‑143 (MQ=255) atcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCAGACCt > 2:219925‑M2/91‑143 (MQ=255) cctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacacccgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATg < 2:325573‑M2/61‑1 (MQ=255) gtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccgcactcgcccggaaaGACCAGGTTGACGCGGCACTCGGCACCATGCTGAACGGTGGTGGGCCCTGccggcttcctgtttgcgtcggcg > 1:37332‑M2/71‑132 (MQ=255) tccgcagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGTTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTg < 2:151313‑M2/79‑1 (MQ=255) cacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCCGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACttgcg > 2:217877‑M2/63‑141 (MQ=255) cacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCCTGCTGCACAGTGATCGGCCATACCTGCTTCATGTCTCAATAGACCAACTTgag > 1:3775‑M2/63‑143 (MQ=255) gtggggcagtaccagatgtgggctgcgcagcacatcgcccaccctcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCt < 2:364122‑M2/88‑1 (MQ=255) gggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGGTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCCTACCTGCGTCATGTCTCAATCGGCGAACCTGGGGACGGCGGGc > 1:581188‑M2/53‑143 (MQ=255) gggcagcaccagatgtgggctgcgcagcacagcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGc < 2:30687‑M2/91‑1 (MQ=255) agcaccagatgtgggctgcgcagcacctcgaacacatgcgctcggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCt < 1:492420‑M2/95‑1 (MQ=255) agcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGCAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGtccgcccgcc > 2:82013‑M2/49‑142 (MQ=255) accagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGTCACCATGCTGAACAGTGATGGGCCATACCTGCTTCCTGTCTCAATCGACGGACTTGAGAACGTCTGGCCGCTGGt > 2:362662‑M2/46‑143 (MQ=255) accagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGACCTTGAGGACGTCTGGCCGCTGGt > 1:639636‑M2/46‑143 (MQ=255) accagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGt < 2:197299‑M2/98‑1 (MQ=255) gatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTgccg > 1:642365‑M2/42‑143 (MQ=255) catgtgggctgcgcagcacctcgcccacacccgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTgccg < 1:298363‑M2/102‑1 (MQ=255) gtgggctgcccagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCt < 1:502694‑M2/105‑1 (MQ=255) ggctgctcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATTCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGATAACGTCTGGCCGCTGGTGCCGCCTGgc < 2:381376‑M2/108‑1 (MQ=255) ggctgcgcagcacagcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAATTTGAGAACGTCTGGCCGCTGGTGCCGCCTGgc < 2:380699‑M2/108‑1 (MQ=255) tgcgcagcacgtcgcccaccctcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGAGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGcc < 2:261800‑M2/111‑1 (MQ=255) gcgcagcacatcgcccacactcgcccggaagGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCtggccgctggcgccaggcggcacca < 2:2545‑M2/112‑12 (MQ=255) cgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTTGcgcccg > 1:281324‑M2/31‑141 (MQ=255) cacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTCCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGCGCCACCTCGCGCCCGGAAtt > 2:183042‑M2/26‑143 (MQ=255) atcgcccccacccgcccggcaaCACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATCCCTTCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAg < 1:246861‑M2/121‑1 (MQ=255) tcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGa > 1:444154‑M2/22‑143 (MQ=255) cccacacgcgcccGGAAAGGCCAGGTTCGAGCGGCACTCGACACCCGGATGCAACGTGATGGGCGCTCCCCGCTTCATGTCTCCATCGTCGATCTGGTTGACGTCTGGCCACTGATGCAGCCTGGCGCCAGTAATTCAGAAAt < 2:123380/133‑1 (MQ=255) cactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTg < 1:579508‑M2/129‑1 (MQ=255) ctcgcccggaaaGACCACGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGACCGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGga < 1:10925‑M2/131‑1 (MQ=255) ctcgaccggcaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGga < 1:236413‑M2/131‑1 (MQ=255) cgcgcccggaaaCACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCGTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGga < 1:144396‑M2/131‑1 (MQ=255) ccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAAt > 1:423933‑M2/8‑143 (MQ=255) gaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGCGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAATTAt < 2:20609‑M2/139‑1 (MQ=255) aaaGACCACGTTGAAGCGGCACTCGACACCCTGCTGAACAGTGATCGGCCATACCTGCTTCATGTCTCAACCGACGAACTTGAGCACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAATTATc < 1:156060‑M2/140‑1 (MQ=255) aaGACCAGGTTGAAGCGGCACTCGACACAATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAGTGTTGGAGAGATTATCa > 1:537229‑M2/3‑143 (MQ=255) | ACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACCCTTACTGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCACCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAATTATCA > NC_000913/3951920‑3952200 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |