Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	72 [0]	[0] 72	insB1–insA	insB1, insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	71 (1.240)	57/266	0.0	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCT  >  NC_000913/1979141‑1979419                                                                                                                                           |                                                                                                                                             ctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                          >  2:610119‑M2/139‑143 (MQ=255) ctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                          <  2:501706‑M2/5‑1 (MQ=255)   ttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                                                                        >  2:1004900‑M2/137‑143 (MQ=255)       acttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                                                                    >  1:680001‑M2/133‑143 (MQ=255)       acttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattctcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                                                                    >  1:973423‑M2/133‑143 (MQ=255)           atctaagacttttcctaaatcgacgcaactgtactcgtcactacacgcgcatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttt                                                                                                                                <  2:147123‑M2/15‑1 (MQ=255)              taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt                                                                                                                             >  1:8524‑M2/126‑143 (MQ=255)                   tttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                        <  2:553103‑M2/23‑1 (MQ=255)                   ttttgccgaaacctacgcaactgtactcgccactacacgcacatacaacggagggaggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaccataaatgTATAGGTCCTACTGTTGTTTTgg                                                                                                                        <  1:384783‑M2/23‑1 (MQ=255)                   tctctcctaagtcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                        <  1:247381‑M2/23‑1 (MQ=255)                       tcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacccaaaacactcaattacttaacataaatgTATAAGTCCTACTTTTGTTTTGGctgt                                                                                                                    >  2:241323‑M2/117‑143 (MQ=255)                         ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaagaatgcgtggtgcagatcacacaaaacactcaattacttaccataaacgTCTaagccatgctcttgcttctggcgtct                                                                                                                  >  2:463173‑M2/115‑134 (MQ=255)                           taggcgacgcgtctgtactcgtcactacacgcgcatacaacggaggggggctgcgattgtcaataatgggtgatggagatcacacaaaacactcaattacttgacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                                                                <  1:160078‑M2/31‑1 (MQ=255)                             atcgaggcaacggtactcgtctctccacgcacatacaacggaggggggctgcgcttttcaataatgcgtgatgcagatcacacaaaactctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCa                                                                                                              <  1:556609‑M2/33‑1 (MQ=255)                             atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaatactgcgtgatgcggatcacacaaaacactcaattacttaacataaatgTATAAGTCATACATTTGTTTTGGGTGTATTtcc                                                                                                              >  1:15220‑M2/111‑142 (MQ=255)                              tcgacgcaactgtactcgtcacaacaaacacatacaacaaagggggcctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCaa                                                                                                             <  2:946501‑M2/34‑1 (MQ=255)                                 acgcgactggacgcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCt                                                                                                          <  1:46322‑M2/37‑1 (MQ=255)                                    caactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                                                                       <  2:212622‑M2/40‑1 (MQ=255)                                     aactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGTGTGTATTTCAATCTGTTa                                                                                                      >  1:1026038‑M2/103‑143 (MQ=255)                                     aactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagaccacgcaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATGCCACTCAGTTa                                                                                                      >  1:394146‑M2/103‑143 (MQ=255)                                         gtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                  <  2:884854‑M2/45‑1 (MQ=255)                                          tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTCTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                                                                 >  1:365420‑M2/98‑143 (MQ=255)                                               gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                            <  2:233308‑M2/51‑1 (MQ=255)                                                  actacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                                                                                           <  2:941627‑M2/52‑1 (MQ=255)                                                  actacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                                                                                           >  1:941627‑M2/90‑141 (MQ=255)                                                    tacacgcgcgttcgacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta                                                                                       <  1:816379‑M2/56‑1 (MQ=255)                                                        cgcacataccacggaggcgggctgcgattttcaataatgcgtgatgcagatcacaccaaacactcaattacttaacataaatgTATACGTCATACTTTTGTTTTGGGTGTATTTCCATCTGTTAAAAAGTTTTTcgctacgct                                                                                   <  2:63338‑M2/60‑1 (MQ=255)                                                           acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                                                                >  1:154163‑M2/81‑143 (MQ=255)                                                            catacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagca                                                                               <  2:766021‑M2/64‑1 (MQ=255)                                                               acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTcgcaagc                                                                            >  1:452782‑M2/77‑143 (MQ=255)                                                               acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagc                                                                            >  1:452241‑M2/77‑143 (MQ=255)                                                                 aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAgccagcaa                                                                          >  2:365776‑M2/75‑143 (MQ=255)                                                                    ggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                       <  2:407784‑M2/72‑1 (MQ=255)                                                                    ggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTGTTTCGCTACGCTAGCAAGCaaaaa                                                                       <  1:283921‑M2/72‑1 (MQ=255)                                                                        gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTTGGTGTATTTCAATATGTTAAAAACTTTTTATATACACTAACAAGGAAAAATGaa                                                                   >  1:900132‑M2/68‑143 (MQ=255)                                                                         ggggctccgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                  <  2:1045608‑M2/77‑1 (MQ=255)                                                                           ggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACa                                                                <  2:285305‑M2/79‑1 (MQ=255)                                                                              tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGATCAAATAAAAGTGCTAGCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGa                                                             >  2:1055076‑M2/62‑143 (MQ=255)                                                                                cgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATCCTTTTGTTTCGGGTGTATTTCCATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAACAAGGAACCAGGaat                                                           >  2:305097‑M2/60‑143 (MQ=255)                                                                                 gcttttcaataacgcgtgatggagatcacacaaaacactcaattacctaacatcaatgTATAAGTCATACTTTTGTTTTGGGTGTACTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaata                                                          <  1:369576‑M2/85‑1 (MQ=255)                                                                                 gattttcaataatgcgtgatgcagatcacccaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTACCCCAATCTGTTAAAAAATTTTTCTCTACCCTAGCAGGCAAAACTGCAACAGGaata                                                          >  2:1064907‑M2/59‑143 (MQ=255)                                                                                 gattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaata                                                          >  2:702461‑M2/59‑143 (MQ=255)                                                                                  attttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTTGCAAGCAAAAGAGAAACATtaataa                                                         >  1:309451‑M2/58‑143 (MQ=255)                                                                                  attttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGgagtac                                                         >  1:308232‑M2/58‑142 (MQ=255)                                                                                    tttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTATTTTAGGTGTACTTAAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAACAAACATGAAACaggaatacga                                                       >  1:806414‑M2/56‑140 (MQ=255)                                                                                         ataatgcgtgatgcagatcacacaaaacactcgattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt                                                  <  1:130389‑M2/93‑1 (MQ=255)                                                                                         ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt                                                  >  2:571056‑M2/51‑143 (MQ=255)                                                                                              gcgtgatgcagatcacacaaaacactcaattacttaacataaatgTGTAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTGAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACCGGAATAAGCGAAATGGGAt                                             >  1:799818‑M2/46‑143 (MQ=255)                                                                                                gtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTATTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAAGAAAAAACAAAATGAGAAGt                                           >  2:1057981‑M2/44‑143 (MQ=255)                                                                                                gtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGGCATACTTTTGTTTTGGGTGTATTTAAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCATAAATGAAGCAGGAATAATCGAAATGGGAGGt                                           >  2:319343‑M2/44‑143 (MQ=255)                                                                                                 tgatgcagatctcacaaaacggtcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGtt                                          <  1:938871‑M2/101‑1 (MQ=255)                                                                                                 tgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGtt                                          <  2:526744‑M2/101‑1 (MQ=255)                                                                                                  gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAATTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGAAATAATCGAAATGAGAtgtag                                         >  1:921843‑M2/42‑141 (MQ=255)                                                                                                    tgcagatcacacaacactcttaattacttaatataagtgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcg                                       <  1:1050465‑M2/104‑1 (MQ=255)                                                                                                     gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcgc                                      >  2:948808‑M2/39‑143 (MQ=255)                                                                                                         atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAg                                  >  2:826273‑M2/35‑143 (MQ=255)                                                                                                           cacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTAAGCTAGCCAGCAAAAATGAAAGAGGCATAATCTAAATGGGATGTTGCGCACAGTc                                >  2:946881‑M2/33‑143 (MQ=255)                                                                                                               caaaacgctcgatgacctaacatgaatgTATAAGTCAGACTTTTGTTTGGGGTGTATATGAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCacaa                            <  1:1049514‑M2/115‑1 (MQ=255)                                                                                                               caaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaaa                            >  1:646275‑M2/29‑143 (MQ=255)                                                                                                                aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAt                           >  2:623057‑M2/28‑143 (MQ=255)                                                                                                                aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAt                           >  1:549386‑M2/28‑143 (MQ=255)                                                                                                                  aacactcgattacgtaacataaatgTATAAGTCATACTTTTGTTGTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                         <  1:434464‑M2/118‑1 (MQ=255)                                                                                                                        caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAcc                   <  2:203452‑M2/124‑1 (MQ=255)                                                                                                                        caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAcc                   <  2:269152‑M2/124‑1 (MQ=255)                                                                                                                         aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCg                  <  2:8524‑M2/125‑1 (MQ=255)                                                                                                                         aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTAACCg                  >  2:556371‑M2/19‑143 (MQ=255)                                                                                                                            tacttaccataaatgTATAAGTCATACGTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATCTTGCGCACAGTCAAAATAACTCACCGTaa               <  2:462087‑M2/128‑1 (MQ=255)                                                                                                                            tacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaa               <  2:711267‑M2/128‑1 (MQ=255)                                                                                                                               ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaata            >  2:422643‑M2/13‑143 (MQ=255)                                                                                                                                  acatacatgTATAAGTCATACTTTTGTTTCGGGTGTATTTCAATCTGTGAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatc         <  2:42247‑M2/134‑1 (MQ=255)                                                                                                                                  acataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatc         <  1:1004900‑M2/134‑1 (MQ=255)                                                                                                                                         tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCt  <  2:365420‑M2/141‑1 (MQ=255)                                                                                                                                           |                                                                                                                                             GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCT  >  NC_000913/1979141‑1979419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑