mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 108 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1097007 = | 78 (1.030) | 6 (0.080) | 6/276 | 9.9 | 8.7% | intergenic (+178/+558) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097534 = | 49 (0.660) | intergenic (+705/+31) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1096988 = | 75 (0.990) | 6 (0.080) | 6/276 | 9.9 | 7.5% | intergenic (+159/+577) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097010 = | 74 (1.000) | intergenic (+181/+555) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 274695 | NA (NA) | 7 (0.100) | 6/274 | 9.9 | NA | coding (423/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913 | = 274727 | NA (NA) | coding (391/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | 3525425 = | 85 (1.120) | 5 (0.070) | 5/264 | 10.2 | 5.9% | intergenic (+4/+162) | mrcA/nudE | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase, Ap3A/Ap2A/ADP‑ribose/NADH hydrolase |
| ? | NC_000913 | 3525447 = | NA (NA) | intergenic (+26/+140) | mrcA/nudE | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase, Ap3A/Ap2A/ADP‑ribose/NADH hydrolase | |||||
| * | ? | NC_000913 | 4317918 = | NA (NA) | 5 (0.070) | 5/268 | 10.3 | NA | noncoding (1/83 nt) | REP323 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP323 (repetitive extragenic palindromic) element, contains 2 REP sequences |
| ? | NC_000913 | 4317950 = | NA (NA) | noncoding (33/83 nt) | REP323 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP323 (repetitive extragenic palindromic) element, contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 3750796 | 89 (1.180) | 5 (0.070) | 5/266 | 10.3 | 5.6% | intergenic (+16/+16) | sgbE/ysaC | L‑ribulose‑5‑phosphate 4‑epimerase/pseudogene |
| ? | NC_000913 | = 3750802 | 84 (1.180) | intergenic (+22/+10) | sgbE/ysaC | L‑ribulose‑5‑phosphate 4‑epimerase/pseudogene | |||||
| * | ? | NC_000913 | = 225998 | NA (NA) | 6 (0.080) | 5/274 | 10.5 | NA | noncoding (240/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 3423663 = | NA (NA) | 10 (0.130) | 5/278 | 10.6 | 12.2% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4171802 | 73 (0.970) | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | 3423663 = | NA (NA) | 10 (0.130) | 5/278 | 10.6 | 12.7% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4040682 | 70 (0.930) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | 3423374 = | 73 (0.970) | 11 (0.150) | 5/278 | 10.6 | 14.0% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 3423663 = | 63 (0.850) | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon | |||||