New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1473285 =	52 (1.350)	4 (0.110)	3/274	5.5	7.1%	pseudogene (2769/3497 nt)	ydbA	pseudogene, autotransporter homolog, interrupted by IS2 and IS30
	?	NC_000913	1473342 =	55 (1.490)					pseudogene (2826/3497 nt)	ydbA	pseudogene, autotransporter homolog, interrupted by IS2 and IS30
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTAAGCAACCGCTTTAGTATGCTGGCAGATGCCGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGT  >  NC_000913/1473143‑1473420                                                                                                                                               |                                                                                                                                        gtgaaGCAACCGCGTCAGTATGCTGGCAGATGCGGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTa                                                                                                                                         <  1:41120/140‑1 (MQ=255)      gCAACCGCTTTAGTATGCTGGCAGATGCCGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGAc                                                                                                                                    <  2:377588/143‑1 (MQ=255)        aaCCGCTTTAGTATGCTGGCAGATGCCGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGGCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCt                                                                                                                                  >  1:546016/1‑143 (MQ=255)        aaCCGCTTTAGTATGCTGGCAGATGCCGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTAACGACCt                                                                                                                                  >  1:370443/1‑143 (MQ=255)            gttttggttggCTGGCGGTTGCCGCGCCGAAAGTGGGTCTCTGGCTGGGGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACTACATGCTGGCATTGCGTAAAACTATCGACCTGAGc                                                                                                                              <  1:346693/133‑1 (MQ=255)            gCTTTAGTATGCTGGCAGATGCCGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGc                                                                                                                              >  2:620003/1‑143 (MQ=255)                          gCAGATGCTGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTGGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGAt                                                                                                                <  1:662613/143‑1 (MQ=255)                          gCAGATGCCGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGAt                                                                                                                <  2:508759/143‑1 (MQ=255)                          gCAGATGCCGCGCCGAAAGGGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGAt                                                                                                                <  1:488996/143‑1 (MQ=255)                          gCAGAGGCCGGGCGGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGGGAGAGGCGATCGGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCAGAGCAGAAGATGATGGAACTGAGCGAAAGCCAGACGAt                                                                                                                <  1:302530/143‑1 (MQ=255)                            acaTGCCGCGCCGAAAGTAGGGAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGa                                                                                                              <  2:186516/141‑1 (MQ=255)                                  cgcgCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTgg                                                                                                        >  2:656491/1‑143 (MQ=255)                                   gcgcCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTggc                                                                                                       >  2:346585/1‑142 (MQ=255)                                      tcGACAGTGGGTACCGGTCTGGCGTTCAACGTTGTCGCGAAAGGTGATCCGCGTGCCGAGTTAGCTAAAAATTCCGAATACGACATGCTGGCATTGCGTAACTCTATCGACCTGTGCGAAAGCCAGACGATGAGTCTGGAGTa                                                                                                    <  1:44453/142‑1 (MQ=255)                                      ccGAATGGGGGTAGCGGTCTGGCGTGCAACGTGGTCGCGAAAGGCGATCCGCGTGGCGAGTTAGGTAATAATACCGAGTACGACATGCTGGCATTGCGTAAAACGATCGACCTGCGCGAAAGCCAGACGATGAGTCTGGAGTa                                                                                                    <  1:662511/143‑1 (MQ=255)                                      ccGAAAGGGGGTAACGGTCTGGCGGTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTa                                                                                                    <  2:61233/143‑1 (MQ=255)                                       cGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACATGAGCGAAAGCGAGACGATACGTGTGGAGTaa                                                                                                   >  1:534869/1‑142 (MQ=255)                                        gAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACg                                                                                                  <  1:498174/143‑1 (MQ=255)                                            gcgggTAACGGTCTGGCGTCCAACGTTGTCGGGACAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTAt                                                                                              <  2:58630/141‑1 (MQ=255)                                             tGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTACAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGCGCACCGTATc                                                                                             >  1:355820/1‑143 (MQ=255)                                                   aCGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGt                                                                                       >  2:388941/1‑143 (MQ=255)                                                    cGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTATGGTATCGCTCGtc                                                                                      >  1:427295/1‑143 (MQ=255)                                                           gctttCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCAAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGGACGGTGTCGCTCGTCTCgatgg                                                                               >  2:351198/4‑143 (MQ=255)                                                             gTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTACCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCGCgacgggg                                                                             >  1:331864/1‑141 (MQ=255)                                                                cAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATTATTCCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCgatggtgatg                                                                          <  2:457333/143‑1 (MQ=255)                                                                         cgcgAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGa                                                                 >  1:371034/1‑143 (MQ=255)                                                                               ggggtagccGCGTGCCGCGTTGGGTACGAATGCCGAAAACGCCATGCTGGCGTTGCGTAAGACGATCGACCTGAGCGAAAGCCAGACGATGGGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCgg                                                           <  1:651617/136‑1 (MQ=255)                                                                               aggggggccGCGGGCCGAGTGAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGCCGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCgg                                                           <  1:160752/136‑1 (MQ=255)                                                                               aGGCGATCCGCGGGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCgg                                                           <  2:625423/143‑1 (MQ=255)                                                                                 gCGATCCGCGTGCCGAGTTAGGTAATCATACCGAATACGACATGCTGGCTTTGCGTAGAACTATAGACCTGAGGGCAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGGTGGTGCGCGGCACGCGGGt                                                         >  2:626088/1‑143 (MQ=255)                                                                                    aTCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGGGCGGAAAGCGGGTGAt                                                      >  1:34240/1‑143 (MQ=255)                                                                                    aTCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCCCGTCTCGAAGGTCACGGTGCGCAGAAAGCcggacat                                                      >  1:221987/1‑139 (MQ=255)                                                                                     tCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCAGAGCGAAAACCAGACGATGAGTATGGAGTCCGGTATGGCCCGTGTCGATGGTGATGGTGAGCAGAAAGCGGGGGATa                                                     >  1:390182/1‑143 (MQ=255)                                                                                     tCCGCGTGCCGAGTTAGGTAATAATAACGAATACGACATGCTGGCATTGCGTAAAACTAACGACCTGAGCGAAAGCCAGACGATGAGACTGGAGTACGGCATCGAACGTCGCGATGGTGACGGGGCGCAGAAAGAGGGTggga                                                     >  1:357363/1‑140 (MQ=255)                                                                                     tCCGCGTGCAGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGAGTAAAACTATGGACCTGAGGGAAAGCGAGACGATGAGTATGGAGTACGGTATGGCTGGTCTCGATGGGGATGGTGAGAAGACAGAGGGGGAtt                                                     >  2:378251/1‑142 (MQ=255)                                                                                      ccGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGAGTGGAGTACGGTATCGCGCGTCTCGATGGTGAGGGTGCGAAGAAAGCGGGTGAtga                                                    >  2:16066/1‑141 (MQ=255)                                                                                       cgcggtccGAGGTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAAt                                                   <  2:276066/137‑1 (MQ=255)                                                                                           tGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCCGACGATGAGTCTGCAGTACGGTATCGCCCACCTCGATGGTGAGGGGGCGCAGACACCGCGGGATAATGGCg                                               >  1:64899/1‑143 (MQ=255)                                                                                                          taataCCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTGGTCTCGATGGTGGTGGTGCGCAGAAAGCGGGTGATCATCGCGTTACAGGCGGTtatg                                >  2:630232/1‑142 (MQ=255)                                                                                                           aataCCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGACGCGTCTGGAGTACGGTATCGCTCGTCTCCCTGGTGATGGTGCCCCGAAGGCGGGTGATACTGGCGttcagggcggggcacg                               >  1:613946/1‑129 (MQ=255)                                                                                                            ataCCGCATACGACAGGCTGGCACCGCGTAAGGCCATCGACCGTACCGAAAGCCAGGCGATGAGTCTGGAGCACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGc                              <  1:279777/143‑1 (MQ=255)                                                                                                             taCCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGAAGGCAGCGGGCCGCAGAACGCGGGAGAGAATGGCGTTACAGGCGGtgcgagcc                             >  1:505876/1‑136 (MQ=255)                                                                                                                       gACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACCGGCGTTTCTAGCCAGTTTTTTgg                   >  2:334795/1‑143 (MQ=255)                                                                                                                         cATGCTGGCATTGCGTAAAACTTTCGACCTTAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGcc                 >  2:479526/1‑143 (MQ=255)                                                                                                                          aTGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGGCTCGATCGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGCGACAGGCGGTGAGAGCCAgagtgttgcagt                >  1:137494/1‑132 (MQ=255)                                                                                                                              tGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGTGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGaaa            >  2:375926/1‑143 (MQ=255)                                                                                                                              tGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGGTATAGCCAGTGTTTTGGCCTGaca            >  2:29806/1‑141 (MQ=255)                                                                                                                                 cATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGGAAGCGGGCGAGAAAGGCGTTACAGGCGGTGATAGCCAGgtttggcgccgaacgaat         >  2:652305/1‑129 (MQ=255)                                                                                                                                    tGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAg      <  2:331864/143‑1 (MQ=255)                                                                                                                                       gTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTTTAGCCGGTTTTTTGGCCTGAAACATCAGATg   >  2:170440/1‑143 (MQ=255)                                                                                                                                        tAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGt  >  2:297067/1‑143 (MQ=255)                                                                                                                                        tAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATAGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGt  >  2:297069/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                        GTTAAGCAACCGCTTTAGTATGCTGGCAGATGCCGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGT  >  NC_000913/1473143‑1473420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.