New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1473285 =52 (1.350)4 (0.110) 3/274 5.5 7.1% pseudogene (2769/3497 nt) ydbA pseudogene, autotransporter homolog, interrupted by IS2 and IS30
?NC_000913 1473342 = 55 (1.490)pseudogene (2826/3497 nt) ydbA pseudogene, autotransporter homolog, interrupted by IS2 and IS30
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGC  >  NC_000913/1473201‑1473482
                                                                                                                                             |                                                                                                                                             
gctttCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCAAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGGACGGTGTCGCTCGTCTCgatgg                                                                                                                                              >  2:351198/4‑143 (MQ=255)
  gTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTACCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCGCgacgggg                                                                                                                                            >  1:331864/1‑141 (MQ=255)
     cAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATTATTCCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCgatggtgatg                                                                                                                                         <  2:457333/143‑1 (MQ=255)
              cgcgAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGa                                                                                                                                >  1:371034/1‑143 (MQ=255)
                    ggggtagccGCGTGCCGCGTTGGGTACGAATGCCGAAAACGCCATGCTGGCGTTGCGTAAGACGATCGACCTGAGCGAAAGCCAGACGATGGGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCgg                                                                                                                          <  1:651617/136‑1 (MQ=255)
                    aggggggccGCGGGCCGAGTGAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGCCGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCgg                                                                                                                          <  1:160752/136‑1 (MQ=255)
                    aGGCGATCCGCGGGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCgg                                                                                                                          <  2:625423/143‑1 (MQ=255)
                      gCGATCCGCGTGCCGAGTTAGGTAATCATACCGAATACGACATGCTGGCTTTGCGTAGAACTATAGACCTGAGGGCAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGGTGGTGCGCGGCACGCGGGt                                                                                                                        >  2:626088/1‑143 (MQ=255)
                         aTCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGGGCGGAAAGCGGGTGAt                                                                                                                     >  1:34240/1‑143 (MQ=255)
                         aTCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCCCGTCTCGAAGGTCACGGTGCGCAGAAAGCcggacat                                                                                                                     >  1:221987/1‑139 (MQ=255)
                          tCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCAGAGCGAAAACCAGACGATGAGTATGGAGTCCGGTATGGCCCGTGTCGATGGTGATGGTGAGCAGAAAGCGGGGGATa                                                                                                                    >  1:390182/1‑143 (MQ=255)
                          tCCGCGTGCCGAGTTAGGTAATAATAACGAATACGACATGCTGGCATTGCGTAAAACTAACGACCTGAGCGAAAGCCAGACGATGAGACTGGAGTACGGCATCGAACGTCGCGATGGTGACGGGGCGCAGAAAGAGGGTggga                                                                                                                    >  1:357363/1‑140 (MQ=255)
                          tCCGCGTGCAGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGAGTAAAACTATGGACCTGAGGGAAAGCGAGACGATGAGTATGGAGTACGGTATGGCTGGTCTCGATGGGGATGGTGAGAAGACAGAGGGGGAtt                                                                                                                    >  2:378251/1‑142 (MQ=255)
                           ccGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGAGTGGAGTACGGTATCGCGCGTCTCGATGGTGAGGGTGCGAAGAAAGCGGGTGAtga                                                                                                                   >  2:16066/1‑141 (MQ=255)
                            cgcggtccGAGGTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAAt                                                                                                                  <  2:276066/137‑1 (MQ=255)
                                tGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCCGACGATGAGTCTGCAGTACGGTATCGCCCACCTCGATGGTGAGGGGGCGCAGACACCGCGGGATAATGGCg                                                                                                              >  1:64899/1‑143 (MQ=255)
                                               taataCCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTGGTCTCGATGGTGGTGGTGCGCAGAAAGCGGGTGATCATCGCGTTACAGGCGGTtatg                                                                                               >  2:630232/1‑142 (MQ=255)
                                                aataCCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGACGCGTCTGGAGTACGGTATCGCTCGTCTCCCTGGTGATGGTGCCCCGAAGGCGGGTGATACTGGCGttcagggcggggcacg                                                                                              >  1:613946/1‑129 (MQ=255)
                                                 ataCCGCATACGACAGGCTGGCACCGCGTAAGGCCATCGACCGTACCGAAAGCCAGGCGATGAGTCTGGAGCACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGc                                                                                             <  1:279777/143‑1 (MQ=255)
                                                  taCCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGAAGGCAGCGGGCCGCAGAACGCGGGAGAGAATGGCGTTACAGGCGGtgcgagcc                                                                                            >  1:505876/1‑136 (MQ=255)
                                                            gACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACCGGCGTTTCTAGCCAGTTTTTTgg                                                                                  >  2:334795/1‑143 (MQ=255)
                                                              cATGCTGGCATTGCGTAAAACTTTCGACCTTAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGcc                                                                                >  2:479526/1‑143 (MQ=255)
                                                               aTGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGGCTCGATCGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGCGACAGGCGGTGAGAGCCAgagtgttgcagt                                                                               >  1:137494/1‑132 (MQ=255)
                                                                   tGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGTGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGaaa                                                                          >  2:375926/1‑143 (MQ=255)
                                                                   tGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGGTATAGCCAGTGTTTTGGCCTGaca                                                                           >  2:29806/1‑141 (MQ=255)
                                                                      cATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGGAAGCGGGCGAGAAAGGCGTTACAGGCGGTGATAGCCAGgtttggcgccgaacgaat                                                                        >  2:652305/1‑129 (MQ=255)
                                                                         tGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAg                                                                    <  2:331864/143‑1 (MQ=255)
                                                                            gTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTTTAGCCGGTTTTTTGGCCTGAAACATCAGATg                                                                 >  2:170440/1‑143 (MQ=255)
                                                                             tAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGt                                                                >  2:297067/1‑143 (MQ=255)
                                                                             tAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATAGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGt                                                                >  2:297069/1‑143 (MQ=255)
                                                                                     tCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGAt                                                        >  2:645780/1‑143 (MQ=255)
                                                                                                gAAAGGCAGACGATGAGGCGGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGaa                                             <  2:61174/143‑1 (MQ=255)
                                                                                                  aaGCCAGACGAGGGGCCGGGAGTACGGGATCGCTCGTCTCGCTGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATGGCCAGTTTTTTGGCCTGACACATCAGATGTCGTTCGATAACGGCATGAACt                                           <  1:352871/143‑1 (MQ=255)
                                                                                                    gCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGACGGTGAGGGTGCGCAGAAAGCGGGTGATAACGGCGTGACAGGCGGATCTAGCCAGTGTTTTGGCCTGAAACATTACGTATTGTTCTATAACGTCACGAACggg                                         >  1:293905/1‑143 (MQ=255)
                                                                                                     ccAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCa                                                                                           <  2:500636/93‑1 (MQ=255)
                                                                                                     ccAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCa                                                                                           >  1:500636/1‑93 (MQ=255)
                                                                                                         actcatcgTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGGTGTTTGGCGTGAAACATGAGATGTCGTTGTATAACGGCCTGAACTGGAATaa                                    >  1:336164/8‑143 (MQ=255)
                                                                                                                 tCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGAAATAACGACTTGc                            >  2:506282/1‑143 (MQ=255)
                                                                                                                 gcgggtgTACGTGATCGGTCGGCGCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGc                            <  1:525256/137‑1 (MQ=255)
                                                                                                                  cTGGAGTACGGTATCGCTCGTCTCGAGGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACCTCAGATGCCCTGCGATAACGGCCTCATCTGGATTTACCCCttccc                           >  2:63922/1‑140 (MQ=255)
                                                                                                                     gAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTa                        <  2:507182/143‑1 (MQ=255)
                                                                                                                        tACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGGTATAGCCAGTTTTTTGGCCTGAACACTGTGTTGGTGGCCGCCAATGGCATGAATCGGAATAACGCCTTGCGTTaaga                     >  2:307395/1‑143 (MQ=255)
                                                                                                                         acggtcgtgcgcGTCTCGATGGTGATGGTGCGCACAAAGCGGGTGATTATGGTGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTacgac                    <  1:620003/132‑1 (MQ=255)
                                                                                                                          cGGTCTCGCGCGTCTCGGTGGTGATGGTGCGCAGACAGGGGTTGATAATGGCGTTACAGGCGGTTATAACCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACTCCTTGCGTTacgacg                   <  1:180101/143‑1 (MQ=255)
                                                                                                                          cGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTCTAGCCAGTTTTTTGCATAACGCCGGCATAAGTGGTTTGATAACGGCATGAACTGGAATAACGCCTTGCGTTacgacg                   >  2:491188/1‑143 (MQ=255)
                                                                                                                          cGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGcaaggcgttattcca                   <  2:57408/143‑15 (MQ=255)
                                                                                                                          cGGTATCGCGCGGCTCGATGGGGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTAacgacg                   <  2:146480/143‑1 (MQ=255)
                                                                                                                            gTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGtt                 <  2:370443/143‑1 (MQ=255)
                                                                                                                            gTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGtt                 <  2:546016/143‑1 (MQ=255)
                                                                                                                            gTATCGCTCGTCTCGAGGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGtt                 <  2:412144/143‑1 (MQ=255)
                                                                                                                            gTAGCGCTTGTCTCGATGGCGCTGGTGCGCAGAAAGCGGGTGGTGGTGGAGAGTCATGCCGATCAACTGATGTTCCTTGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGtt                 <  1:656491/143‑1 (MQ=255)
                                                                                                                            gTAGCGCTCGTCGCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTATTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGtt                 <  1:8653/143‑1 (MQ=255)
                                                                                                                               tCGCGCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATCATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTcac              <  2:403814/143‑1 (MQ=255)
                                                                                                                                cGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTAAGACGTTcaca             >  2:492989/1‑143 (MQ=255)
                                                                                                                                 gCTCGGGTCGATGGTGAGGGTGCGCAGAAAGTGGGTGATGATGGCGTGACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACaa            <  1:346585/143‑1 (MQ=255)
                                                                                                                                     gTCTCGATGGTGATGGTGCGCAGATCGTGGGTGATAAAACCGGTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCtt        <  2:522834/143‑1 (MQ=255)
                                                                                                                                       cgtgagggtggtggtgCGGAGAAAGCGGGAGATAATGGCGGTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAACAACGCCTTGCGTTACGACGTTCACAACCTTGa      <  2:129504/137‑1 (MQ=255)
                                                                                                                                          gatggtgatgggGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGAcag   <  2:194168/143‑1 (MQ=255)
                                                                                                                                           agggtggtggtgCGCGGTACGCGGGTGATAATGGCGTTACGGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGGCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGAcagc  <  1:551890/141‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                             
GCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGC  >  NC_000913/1473201‑1473482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.