mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_vch_tpiA | 1,544,021 | 1 | . | A | 67.5% | 88.9 / 43.6 | 40 | coding (40/1389 nt) | narU | nitrate/nitrite transporter |
| * | NC_000913_3_vch_tpiA | 2,214,152 | 0 | A | T | 29.2% | 80.5 / 27.3 | 48 | Y165N (TAT→AAT) | yehU | inner membrane putative sensory kinase in two‑component system with YehT |
| * | NC_000913_3_vch_tpiA | 1,544,022 | 1 | . | A | 23.7% | 79.1 / 38.4 | 38 | coding (39/1389 nt) | narU | nitrate/nitrite transporter |
| * | NC_000913_3_vch_tpiA | 4,296,090 | 0 | C | T | 21.8% | 86.1 / 24.4 | 56 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 34 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 3423376 = | 50 (1.110) | 10 (0.220) | 7/286 | 5.0 | 20.1% | noncoding (3423376/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 4213192 | 30 (0.670) | noncoding (4213192/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 3632763 | 37 (0.820) | 5 (0.120) | 5/266 | 5.6 | 12.5% | noncoding (3632763/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 3632776 | 36 (0.870) | noncoding (3632776/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 4542712 = | 26 (0.580) | 5 (0.120) | 4/272 | 6.2 | 13.1% | noncoding (4542712/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 4543026 = | 42 (0.990) | noncoding (4543026/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 4263256 | 50 (1.110) | 4 (0.090) | 4/272 | 6.2 | 7.6% | noncoding (4263256/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 4263261 | 51 (1.210) | noncoding (4263261/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 1061349 = | 35 (0.780) | 4 (0.090) | 4/272 | 6.2 | 10.3% | noncoding (1061349/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 1061384 = | 37 (0.880) | noncoding (1061384/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 4162863 = | 48 (1.060) | 4 (0.090) | 4/276 | 6.3 | 7.9% | noncoding (4162863/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 4162887 = | 48 (1.120) | noncoding (4162887/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 2178619 | 36 (0.800) | 5 (0.120) | 4/278 | 6.3 | 12.7% | noncoding (2178619/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 2178624 | 34 (0.790) | noncoding (2178624/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 3915733 = | 36 (0.800) | 4 (0.090) | 4/284 | 6.4 | 9.7% | noncoding (3915733/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 3915808 = | 39 (0.880) | noncoding (3915808/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 2729630 = | NA (NA) | 4 (0.090) | 4/280 | 6.4 | NA | noncoding (2729630/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 2729652 = | NA (NA) | noncoding (2729652/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 3423376 = | 50 (1.110) | 4 (0.090) | 4/286 | 6.5 | 12.6% | noncoding (3423376/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 3946822 | 6 (0.130) | noncoding (3946822/4641682 nt) | repeat_region | repeat region | |||||