breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 1,016,418 C→A intergenic (‑43/‑176) sulA ← / → sxy SOS cell division inhibitor/CRP‑S‑dependent promoter expression factor
JC JC 1,972,762 IS5 (–) +4 bp intergenic (‑308/‑469) flhD ← / → uspC flagellar class II regulon transcriptional activator, with FlhC/universal stress protein
RA 3,888,770 A→G I400I (ATT→ATC purP ← adenine permease, high affinity; adenine:H+ symporter

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 454287 456728 2442 47 [46] [46] 48 lon lon

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 360104 =113 (1.090)169 (1.640) 124/274 0.0 59.9% intergenic (‑38/+557) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor
?CP009273 = 360286 NA (NA)intergenic (‑220/+375) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor
* ? CP009273 1203246 =39 (0.380)40 (0.440) 37/242 2.7 57.0% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?CP009273 1205075 = 26 (0.290)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? CP009273 = 120326139 (0.380)75 (0.820) 60/242 0.6 71.3% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?CP009273 = 1205058 26 (0.290)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related