mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,178,209 | 0 | C | T | 48.1% | 3.5 / 171.6 | 104 | R978C (CGT→TGT) | rpoC | RNA polymerase, beta prime subunit |
| * | CP009273 | 4,178,501 | 0 | G | C | 45.8% | 36.9 / 191.3 | 107 | R1075P (CGT→CCT) | rpoC | RNA polymerase, beta prime subunit |
| * | CP009273 | 1,297,123 | 0 | C | T | 33.3% | 119.9 / 98.5 | 98 | intergenic (+53/‑33) | oppA/oppB | oligopeptide transporter subunit/oligopeptide transporter subunit |
| * | CP009273 | 2,170,734 | 0 | G | T | 25.8% | 100.9 / 19.9 | 66 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,632,621 | 0 | T | G | 25.0% | 145.3 / 12.5 | 68 | N8H (AAC→CAC) | yfgM | putative anti‑RcsB factor |
| * | CP009273 | 3,997,395 | 0 | G | C | 24.2% | 176.1 / 11.7 | 71 | F48L (TTC→TTG) | rarD | putative chloramphenical resistance permease |
| * | CP009273 | 2,632,624 | 0 | C | G | 21.9% | 207.7 / 10.6 | 75 | E7Q (GAA→CAA) | yfgM | putative anti‑RcsB factor |
| * | CP009273 | 4,008,453 | 0 | G | T | 20.6% | 217.0 / 12.9 | 93 | D681Y (GAT→TAT) | metE | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase |
| Marginal new junction evidence (lowest skew 10 of 289 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4532499 = | 74 (0.720) | 35 (0.360) | 32/256 | 3.9 | 32.9% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 74 (0.770) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 4532507 | 65 (0.630) | 29 (0.300) | 24/256 | 5.5 | 30.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 72 (0.750) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 3081384 = | 127 (1.230) | 7 (0.070) | 7/264 | 11.9 | 6.2% | intergenic (+165/‑259) | metK/galP | S‑adenosylmethionine synthetase/D‑galactose transporter |
| ? | CP009273 | 3081439 = | 89 (0.890) | intergenic (+220/‑204) | metK/galP | S‑adenosylmethionine synthetase/D‑galactose transporter | |||||
| * | ? | CP009273 | = 1526524 | 33 (0.320) | 7 (0.070) | 7/266 | 12.0 | 14.1% | coding (452/1137 nt) | ydcC | H repeat‑associated putative transposase |
| ? | CP009273 | = 3618239 | 53 (0.530) | coding (502/1137 nt) | yhhI | putative transposase | |||||
| * | ? | CP009273 | = 1526524 | 33 (0.320) | 7 (0.070) | 7/266 | 12.0 | 18.4% | coding (452/1137 nt) | ydcC | H repeat‑associated putative transposase |
| ? | CP009273 | = 1526574 | 30 (0.300) | coding (502/1137 nt) | ydcC | H repeat‑associated putative transposase | |||||
| * | ? | CP009273 | 221641 = | NA (NA) | 6 (0.060) | 6/264 | 12.5 | NA | noncoding (1384/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | 221663 = | NA (NA) | noncoding (1406/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 180681 | 98 (0.950) | 6 (0.060) | 6/264 | 12.5 | 5.7% | intergenic (‑99/+63) | yaeH/yaeI | UPF0325 family protein/phosphodiesterase with model substrate bis‑pNPP |
| ? | CP009273 | = 180722 | 104 (1.050) | intergenic (‑140/+22) | yaeH/yaeI | UPF0325 family protein/phosphodiesterase with model substrate bis‑pNPP | |||||
| * | ? | CP009273 | = 1000677 | 103 (1.000) | 6 (0.060) | 6/266 | 12.6 | 5.8% | coding (454/1011 nt) | pyrD | dihydro‑orotate oxidase, FMN‑linked |
| ? | CP009273 | = 1000711 | 95 (0.950) | coding (488/1011 nt) | pyrD | dihydro‑orotate oxidase, FMN‑linked | |||||
| * | ? | CP009273 | 845755 = | 97 (0.940) | 6 (0.060) | 6/268 | 12.6 | 5.5% | intergenic (‑202/‑151) | rhtA/ompX | threonine and homoserine efflux system/outer membrane protein X |
| ? | CP009273 | 845897 = | 113 (1.120) | intergenic (‑344/‑9) | rhtA/ompX | threonine and homoserine efflux system/outer membrane protein X | |||||
| * | ? | CP009273 | 3114664 = | 94 (0.910) | 6 (0.060) | 6/272 | 12.8 | 6.1% | intergenic (‑26/+329) | glcA/glcB | glycolate transporter/malate synthase G |
| ? | CP009273 | 3114698 = | 90 (0.880) | intergenic (‑60/+295) | glcA/glcB | glycolate transporter/malate synthase G | |||||