mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 82,638 | Δ1 bp | 5.1% | coding (522/1725 nt) | ilvI → | acetolactate synthase 3 large subunit |
| RA | 204,780 | T→A | 5.3% | F1056L (TTT→TTA) | dnaE → | DNA polymerase III alpha subunit |
| RA | 249,836 | A→T | 5.7% | intergenic (+188/‑130) | yafP → / → ykfJ | putative acyl‑CoA transferase/pseudogene |
| RA | 481,586 | G→C | 5.1% | A124P (GCT→CCT) | acrR → | transcriptional repressor |
| RA | 481,593 | T→C | 5.3% | V126A (GTG→GCG) | acrR → | transcriptional repressor |
| RA | 541,752 | C→T | 5.6% | R23H (CGT→CAT) | allD ← | ureidoglycolate dehydrogenase |
| RA | 716,462 | T→A | 5.2% | intergenic (+166/+50) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 716,465 | T→A | 5.2% | intergenic (+169/+47) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 754,785 | C→T | 7.2% | T208T (ACC→ACT) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
| RA | 823,725 | G→A | 5.6% | P238L (CCA→CTA) | ybhF ← | putative transporter subunit of ABC superfamily: ATP‑binding component |
| RA | 837,098 | A→G | 5.2% | intergenic (‑111/+154) | fiu ← / ← mcbA | catecholate siderophore receptor Fiu/colanic acid mucoidy stimulation protein |
| RA | 837,099 | A→C | 5.2% | intergenic (‑112/+153) | fiu ← / ← mcbA | catecholate siderophore receptor Fiu/colanic acid mucoidy stimulation protein |
| RA | 872,024 | A→T | 5.2% | N412Y (AAT→TAT) ‡ | yliF → | putative membrane‑anchored diguanylate cyclase |
| RA | 872,025 | A→T | 6.2% | N412I (AAT→ATT) ‡ | yliF → | putative membrane‑anchored diguanylate cyclase |
| RA | 951,912 | G→A | 5.1% | N59N (AAC→AAT) ‡ | ycaO ← | ribosomal protein S12 methylthiotransferase accessory factor |
| RA | 951,913 | T→A | 5.1% | N59I (AAC→ATC) ‡ | ycaO ← | ribosomal protein S12 methylthiotransferase accessory factor |
| RA | 951,914 | T→C | 5.1% | N59D (AAC→GAC) ‡ | ycaO ← | ribosomal protein S12 methylthiotransferase accessory factor |
| RA | 1,147,292 | C→T | 5.1% | N74N (AAC→AAT) | acpP → | acyl carrier protein (ACP) |
| RA | 1,331,323 | T→G | 8.4% | D412E (GAT→GAG) | acnA → | aconitate hydratase 1 |
| RA | 1,338,364 | G→A | 5.5% | A80A (GCC→GCT) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,380,478 | T→A | 7.5% | R237R (CGT→CGA) | ycjF → | UPF0283 family inner membrane protein |
| RA | 1,393,921 | T→A | 5.2% | intergenic (‑138/+57) | fnr ← / ← ogt | oxygen‑sensing anaerobic growth regulon transcriptional regulator; autorepressor/O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase |
| RA | 1,408,919 | T→A | 5.5% | A44A (GCA→GCT) ‡ | recT ← | Rac prophage; recombination and repair protein |
| RA | 1,408,920 | G→A | 5.5% | A44V (GCA→GTA) ‡ | recT ← | Rac prophage; recombination and repair protein |
| RA | 1,408,924 | C→G | 5.6% | A43P (GCA→CCA) | recT ← | Rac prophage; recombination and repair protein |
| RA | 1,408,928 | T→C | 5.3% | Q41Q (CAA→CAG) ‡ | recT ← | Rac prophage; recombination and repair protein |
| RA | 1,408,929 | T→A | 5.2% | Q41L (CAA→CTA) ‡ | recT ← | Rac prophage; recombination and repair protein |
| RA | 1,413,176 | G→T | 5.8% | E83D (GAG→GAT) | sieB → | Rac prophage; phage superinfection exclusion protein |
| RA | 1,413,177 | C→A | 5.6% | Q84K (CAA→AAA) | sieB → | Rac prophage; phage superinfection exclusion protein |
| RA | 1,413,181:1 | +A | 5.7% | coding (254/489 nt) | sieB → | Rac prophage; phage superinfection exclusion protein |
| RA | 1,413,184 | T→C | 5.5% | V86A (GTA→GCA) | sieB → | Rac prophage; phage superinfection exclusion protein |
| RA | 1,413,186 | T→A | 5.5% | L87M (TTG→ATG) ‡ | sieB → | Rac prophage; phage superinfection exclusion protein |
| RA | 1,413,188 | G→A | 5.6% | L87L (TTG→TTA) ‡ | sieB → | Rac prophage; phage superinfection exclusion protein |
| RA | 1,413,190 | Δ1 bp | 5.6% | coding (263/489 nt) | sieB → | Rac prophage; phage superinfection exclusion protein |
| RA | 1,425,590 | T→A | 6.0% | I762N (ATT→AAT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,524,061 | Δ1 bp | 5.5% | pseudogene (1903/2037 nt) | rhsE → | pseudogene, Rhs family protein |
| RA | 1,562,994 | T→G | 5.4% | K29N (AAA→AAC) | yddW ← | liprotein, glycosyl hydrolase homolog |
| RA | 1,673,069 | T→A | 6.0% | F129Y (TTC→TAC) | ydgH → | DUF1471 family periplasmic protein |
| RA | 1,673,071 | T→G | 5.1% | Y130D (TAT→GAT) | ydgH → | DUF1471 family periplasmic protein |
| RA | 1,673,074 | C→A | 5.4% | R131S (CGT→AGT) ‡ | ydgH → | DUF1471 family periplasmic protein |
| RA | 1,673,076 | T→A | 5.4% | R131R (CGT→CGA) ‡ | ydgH → | DUF1471 family periplasmic protein |
| RA | 1,709,497 | C→T | 5.1% | R217H (CGC→CAC) | pdxY ← | pyridoxamine kinase |
| RA | 1,731,187 | C→T | 5.4% | V121M (GTG→ATG) | ydhP ← | putative transporter |
| RA | 1,812,700 | A→G | 5.5% | L20L (TTA→CTA) | chbF ← | phospho‑chitobiase; general 6‑phospho‑beta‑glucosidase activity |
| RA | 1,859,939 | G→C | 5.9% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,994,125 | G→C | 5.2% | S127S (TCC→TCG) ‡ | fliZ ← | RpoS antagonist; putative regulator of FliA activity |
| RA | 1,994,126 | G→A | 5.2% | S127F (TCC→TTC) ‡ | fliZ ← | RpoS antagonist; putative regulator of FliA activity |
| RA | 1,994,135 | T→C | 5.1% | Q124R (CAA→CGA) | fliZ ← | RpoS antagonist; putative regulator of FliA activity |
| RA | 1,999,942 | A→T | 5.1% | V102V (GTA→GTT) | amyA → | cytoplasmic alpha‑amylase |
| RA | 2,007,201 | T→A | 6.1% | R164R (CGT→CGA) | fliF → | flagellar basal‑body MS‑ring and collar protein |
| RA | 2,132,403 | G→A | 5.7% | G341S (GGT→AGT) | yegH → | inner membrane protein |
| RA | 2,173,210 | T→C | 5.1% | F304S (TTC→TCC) | yegT → | nucleoside transporter, low affinity |
| RA | 2,236,363 | T→G | 5.1% | L28L (CTA→CTC) ‡ | yeiB ← | DUF418 family putative inner membrane protein |
| RA | 2,236,364 | A→C | 5.1% | L28R (CTA→CGA) ‡ | yeiB ← | DUF418 family putative inner membrane protein |
| RA | 2,236,365 | G→T | 5.1% | L28I (CTA→ATA) ‡ | yeiB ← | DUF418 family putative inner membrane protein |
| RA | 2,236,366 | C→A | 5.5% | G27G (GGG→GGT) | yeiB ← | DUF418 family putative inner membrane protein |
| RA | 2,279,056 | G→T | 8.7% | G401V (GGT→GTT) | yejM → | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| RA | 2,279,059 | C→G | 8.8% | T402S (ACT→AGT) | yejM → | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| RA | 2,279,062 | A→C | 8.0% | N403T (AAC→ACC) | yejM → | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| RA | 2,400,612 | T→A | 5.7% | intergenic (‑492/‑428) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 |
| RA | 2,536,855 | G→A | 5.5% | L11L (CTC→CTT) | cysP ← | thiosulfate‑binding protein |
| RA | 2,608,265 | A→G | 5.3% | W326R (TGG→CGG) | yfgO ← | putative UPF0118 family inner membrane permease |
| RA | 2,625,046 | Δ1 bp | 5.7% | coding (849/1578 nt) | guaA ← | GMP synthetase (glutamine aminotransferase) |
| RA | 2,640,198 | G→A | 5.3% | R163C (CGC→TGC) | pbpC ← | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| RA | 2,719,426 | T→C | 100% | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 2,782,030 | A→T | 5.2% | intergenic (+22/‑314) | ygaQ → / → csiD | uncharacterized protein; putative enzyme/carbon starvation protein |
| RA | 2,782,032 | A→T | 5.2% | intergenic (+24/‑312) | ygaQ → / → csiD | uncharacterized protein; putative enzyme/carbon starvation protein |
| RA | 2,782,033 | A→T | 5.2% | intergenic (+25/‑311) | ygaQ → / → csiD | uncharacterized protein; putative enzyme/carbon starvation protein |
| RA | 2,782,035 | A→T | 5.2% | intergenic (+27/‑309) | ygaQ → / → csiD | uncharacterized protein; putative enzyme/carbon starvation protein |
| RA | 2,955,549 | A→T | 5.1% | I80N (ATC→AAC) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 3,039,270 | C→T | 5.5% | intergenic (‑10/+257) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
| RA | 3,039,271 | G→C | 5.3% | intergenic (‑11/+256) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
| RA | 3,039,272 | A→G | 5.3% | intergenic (‑12/+255) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
| RA | 3,041,745 | T→A | 5.3% | Q219L (CAG→CTG) | gcvP ← | glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
| RA | 3,368,093 | T→C | 7.1% | intergenic (‑245/‑135) | nanR ← / → dcuD | transcriptional repressor of the nan operon, induced by sialic acid/putative transporter |
| RA | 3,368,095 | A→T | 7.9% | intergenic (‑247/‑133) | nanR ← / → dcuD | transcriptional repressor of the nan operon, induced by sialic acid/putative transporter |
| RA | 3,368,097 | G→A | 7.0% | intergenic (‑249/‑131) | nanR ← / → dcuD | transcriptional repressor of the nan operon, induced by sialic acid/putative transporter |
| RA | 3,463,553 | T→A | 5.3% | E379V (GAA→GTA) | tufA ← | translation elongation factor EF‑Tu 1 |
| RA | 3,602,604 | T→C | 6.2% | Y10H (TAT→CAT) ‡ | yhhQ → | DUF165 family inner membrane protein |
| RA | 3,602,605 | A→T | 6.2% | Y10F (TAT→TTT) ‡ | yhhQ → | DUF165 family inner membrane protein |
| RA | 3,602,608 | A→T | 6.1% | K11M (AAG→ATG) ‡ | yhhQ → | DUF165 family inner membrane protein |
| RA | 3,602,609 | G→A | 6.4% | K11K (AAG→AAA) ‡ | yhhQ → | DUF165 family inner membrane protein |
| RA | 3,607,202 | T→A | 5.1% | L59* (TTG→TAG) | nikA → | nickel‑binding, heme‑binding periplasmic protein |
| RA | 3,934,917 | G→A | 8.1% | intergenic (‑230/‑251) | yieP ← / → rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon |
| RA | 4,074,293 | C→T | 5.2% | R99H (CGT→CAT) | fdhE ← | formate dehydrogenase formation protein |
| RA | 4,102,735 | A→G | 5.9% | intergenic (+52/‑160) | yiiR → / → yiiS | DUF805 family putative inner membrane protein/UPF0381 family protein |
| RA | 4,233,364 | A→T | 5.3% | I27I (ATT→ATA) | malG ← | maltose transporter subunit |
| RA | 4,250,012 | G→T | 5.1% | intergenic (‑81/‑237) | zur ← / → yjbL | transcriptional repressor, Zn(II)‑binding/uncharacterized protein |
| RA | 4,392,060 | Δ1 bp | 5.2% | coding (206/1260 nt) | hflK → | modulator for HflB protease specific for phage lambda cII repressor |
| RA | 4,392,061 | G→A | 5.3% | S69S (TCG→TCA) | hflK → | modulator for HflB protease specific for phage lambda cII repressor |
| RA | 4,545,476 | A→G | 5.3% | I221T (ATA→ACA) | yjiC ← | uncharacterized protein |
| RA | 4,545,483 | C→A | 5.3% | D219Y (GAC→TAC) | yjiC ← | uncharacterized protein |
| RA | 4,545,486 | T→G | 5.1% | N218H (AAT→CAT) | yjiC ← | uncharacterized protein |
| RA | 4,547,097 | G→A | 6.4% | A96A (GCG→GCA) | iraD → | RpoS stabilzer after DNA damage, anti‑RssB factor |
| RA | 4,581,315 | T→A | 8.0% | intergenic (‑219/‑159) | yjiY ← / → tsr | putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor |
| RA | 4,581,316 | C→T | 7.9% | intergenic (‑220/‑158) | yjiY ← / → tsr | putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor |
| RA | 4,581,317 | A→G | 7.9% | intergenic (‑221/‑157) | yjiY ← / → tsr | putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor |
| RA | 4,581,318 | T→A | 8.0% | intergenic (‑222/‑156) | yjiY ← / → tsr | putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 3432029 | 3432548 | 520 | 44 [42] | [43] 44 | zntR–[yhdN] | zntR,[yhdN] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 47193 | 89 (0.960) | 5 (0.060) | 3/234 | NT | 5.1% | intergenic (+55/‑53) | yaaU/kefF | putative transporter/potassium‑efflux system ancillary protein for KefC, glutathione‑regulated; quinone oxidoreductase, FMN‑dependent |
| ? | CP009273 | = 47230 | 101 (1.160) | intergenic (+92/‑16) | yaaU/kefF | putative transporter/potassium‑efflux system ancillary protein for KefC, glutathione‑regulated; quinone oxidoreductase, FMN‑dependent | |||||
| * | ? | CP009273 | = 223727 | NA (NA) | 8 (0.090) | 6/246 | NT | NA | noncoding (1482/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 223751 | NA (NA) | noncoding (1506/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 224240 | NA (NA) | 5 (0.060) | 5/244 | NT | NA | noncoding (1995/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 224275 | NA (NA) | noncoding (2030/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 242633 | 86 (0.930) | 6 (0.070) | 6/226 | NT | 7.0% | coding (94/279 nt) | yafQ | translation inhibitor toxin of toxin‑antitoxin pair YafQ/DinJ |
| ? | CP009273 | = 242654 | 82 (0.980) | coding (73/279 nt) | yafQ | translation inhibitor toxin of toxin‑antitoxin pair YafQ/DinJ | |||||
| * | ? | CP009273 | 311904 = | NA (NA) | 3 (0.030) | 3/232 | NT | NA | coding (607/867 nt) | insF1 | IS3 transposase B |
| ? | CP009273 | 311941 = | NA (NA) | coding (644/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | CP009273 | = 312127 | NA (NA) | 3 (0.030) | 3/240 | NT | NA | coding (830/867 nt) | insF1 | IS3 transposase B |
| ? | CP009273 | = 312162 | NA (NA) | coding (865/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | CP009273 | 360104 = | 65 (0.700) | 175 (1.890) | 125/250 | NT | 72.9% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 753907 = | NA (NA) | 4 (0.060) +29 bp |
4/192 | NT | NA | noncoding (43/118 nt) | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | CP009273 | = 2284830 | NA (NA) | noncoding (199/199 nt) | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 1203246 = | 13 (0.140) | 62 (0.770) | 55/218 | NT | 83.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 13 (0.160) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 13 (0.140) | 81 (1.000) | 64/218 | NT | 86.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 13 (0.160) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1427429 = | 78 (0.840) | 4 (0.050) | 4/232 | NT | 8.7% | coding (503/591 nt) | pinR | Rac prophage; putative site‑specific recombinase |
| ? | CP009273 | = 1628454 | 12 (0.140) | coding (576/591 nt) | pinQ | Qin prophage; putative site‑specific recombinase | |||||
| * | ? | CP009273 | = 1930016 | 72 (0.780) | 4 (0.050) | 4/238 | NT | 5.2% | coding (556/1476 nt) | zwf | glucose‑6‑phosphate 1‑dehydrogenase |
| ? | CP009273 | = 1930055 | 76 (0.860) | coding (517/1476 nt) | zwf | glucose‑6‑phosphate 1‑dehydrogenase | |||||
| * | ? | CP009273 | 1972854 = | 1 (0.010) | 75 (0.810) | 63/250 | NT | 98.7% | intergenic (‑400/‑380) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | 3576788 = | NA (NA) | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA | |||||
| * | ? | CP009273 | = 1972861 | 2 (0.020) | 102 (1.100) | 76/250 | NT | 98.1% | intergenic (‑407/‑373) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | = 3577555 | NA (NA) | intergenic (+15/‑1) | insB1/yrhA | IS1 transposase B/pseudogene, interrupted by IS1E | |||||
| * | ? | CP009273 | = 1990208 | 49 (0.530) | 3 (0.030) | 3/242 | NT | 5.4% | coding (106/723 nt) | sdiA | quorum‑sensing transcriptional activator |
| ? | CP009273 | = 1990271 | 57 (0.630) | coding (43/723 nt) | sdiA | quorum‑sensing transcriptional activator | |||||
| * | ? | CP009273 | = 2046399 | 86 (0.930) | 4 (0.050) | 4/230 | NT | 5.0% | pseudogene (411/1053 nt) | yeeL | pseudogene, glycosyltransferase homology |
| ? | CP009273 | = 2046436 | 72 (0.840) | pseudogene (374/1053 nt) | yeeL | pseudogene, glycosyltransferase homology | |||||
| * | ? | CP009273 | = 2754266 | 77 (0.830) | 5 (0.050) | 5/250 | NT | 6.1% | coding (361/627 nt) | yfjJ | CP4‑57 prophage; uncharacterized protein |
| ? | CP009273 | = 2754321 | 77 (0.830) | coding (416/627 nt) | yfjJ | CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | CP009273 | 2988815 = | 70 (0.750) | 4 (0.050) | 4/236 | NT | 5.6% | pseudogene (305/447 nt) | ygeN | pseudogene |
| ? | CP009273 | 2988863 = | 68 (0.780) | pseudogene (257/447 nt) | ygeN | pseudogene | |||||
| * | ? | CP009273 | 3074161 = | 84 (0.910) | 5 (0.060) | 5/242 | NT | 5.9% | coding (834/1992 nt) | tktA | transketolase 1, thiamine triphosphate‑binding |
| ? | CP009273 | 3074185 = | 78 (0.870) | coding (810/1992 nt) | tktA | transketolase 1, thiamine triphosphate‑binding | |||||
| * | ? | CP009273 | = 3260512 | 69 (0.740) | 4 (0.050) | 4/236 | NT | 5.6% | intergenic (‑88/‑227) | tdcA/tdcR | tdc operon transcriptional activator/L‑threonine dehydratase operon activator protein |
| ? | CP009273 | = 3260564 | 71 (0.810) | intergenic (‑140/‑175) | tdcA/tdcR | tdc operon transcriptional activator/L‑threonine dehydratase operon activator protein | |||||
| * | ? | CP009273 | 3275445 = | 74 (0.800) | 4 (0.050) | 3/234 | NT | 5.3% | coding (111/1155 nt) | agaS | tagatose‑6‑phosphate ketose/aldose isomerase |
| ? | CP009273 | 3275525 = | 75 (0.860) | coding (191/1155 nt) | agaS | tagatose‑6‑phosphate ketose/aldose isomerase | |||||
| * | ? | CP009273 | 3368419 = | 123 (1.330) | 6 (0.070) | 4/240 | NT | 5.0% | coding (192/1368 nt) | dcuD | putative transporter |
| ? | CP009273 | 3368455 = | 109 (1.220) | coding (228/1368 nt) | dcuD | putative transporter | |||||
| * | ? | CP009273 | 3793728 = | 79 (0.850) | 4 (0.040) | 4/242 | NT | 5.0% | coding (598/699 nt) | waaY | lipopolysaccharide core biosynthesis protein |
| ? | CP009273 | 3793753 = | 75 (0.840) | coding (573/699 nt) | waaY | lipopolysaccharide core biosynthesis protein | |||||
| * | ? | CP009273 | 3883442 = | 85 (0.920) | 6 (0.070) | 4/240 | NT | 7.1% | coding (1353/1416 nt) | tnaA | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| ? | CP009273 | 3883507 = | 75 (0.840) | intergenic (+2/‑89) | tnaA/tnaB | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/tryptophan transporter of low affinity | |||||
| * | ? | CP009273 | 4251122 = | 80 (0.860) | 4 (0.050) | 4/234 | NT | 5.7% | coding (596/708 nt) | yjbM | uncharacterized protein |
| ? | CP009273 | 4251202 = | 58 (0.670) | coding (676/708 nt) | yjbM | uncharacterized protein | |||||
| * | ? | CP009273 | 4256848 = | NA (NA) | 8 (0.090) | 7/242 | NT | 8.9% | noncoding (33/97 nt) | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 4256895 = | 82 (0.910) | noncoding (80/97 nt) | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 4277136 = | 73 (0.790) | 4 (0.050) | 4/232 | NT | 5.5% | coding (164/1959 nt) | acs | acetyl‑CoA synthetase |
| ? | CP009273 | 4277192 = | 69 (0.800) | coding (108/1959 nt) | acs | acetyl‑CoA synthetase | |||||
| * | ? | CP009273 | = 4364147 | 92 (0.990) | 5 (0.060) | 5/242 | NT | 5.3% | intergenic (‑96/+299) | yjeJ/epmB | uncharacterized protein/EF‑P‑Lys34 lysylation protein; weak lysine 2,3‑aminomutase |
| ? | CP009273 | = 4364188 | 90 (1.000) | intergenic (‑137/+258) | yjeJ/epmB | uncharacterized protein/EF‑P‑Lys34 lysylation protein; weak lysine 2,3‑aminomutase | |||||
| * | ? | CP009273 | 4498320 = | NA (NA) | 3 (0.030) | 3/242 | NT | 75.6% | noncoding (140/1331 nt) | IS2 | repeat region |
| ? | CP009273 | 4498356 = | 1 (0.010) | noncoding (176/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | 4498324 = | NA (NA) | 6 (0.070) | 6/238 | NT | 86.3% | noncoding (144/1331 nt) | IS2 | repeat region |
| ? | CP009273 | 4498360 = | 1 (0.010) | noncoding (180/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | 4532499 = | 75 (0.810) | 4 (0.050) | 4/232 | NT | 5.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 62 (0.720) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 4532507 | 73 (0.790) | 4 (0.050) | 4/232 | NT | 5.8% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 62 (0.720) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||