mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 98 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4604648 = | 117 (1.260) | 3 (0.030) | 3/238 | NT | 2.8% | coding (713/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme |
| ? | CP009273 | 4604691 = | 99 (1.120) | coding (670/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme | |||||
| * | ? | CP009273 | = 4529899 | 76 (0.820) | 3 (0.030) | 3/240 | NT | 3.6% | intergenic (‑581/‑875) | nanC/fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
| ? | CP009273 | = 4529929 | 87 (0.980) | intergenic (‑611/‑845) | nanC/fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA | |||||
| * | ? | CP009273 | = 4528529 | 90 (0.970) | 3 (0.030) | 3/244 | NT | 3.1% | coding (54/1107 nt) | nanM | N‑acetylneuraminic acid mutarotase |
| ? | CP009273 | = 4528561 | 97 (1.070) | coding (22/1107 nt) | nanM | N‑acetylneuraminic acid mutarotase | |||||
| * | ? | CP009273 | = 4494467 | 65 (0.700) | 3 (0.030) | 3/238 | NT | 4.3% | coding (593/1218 nt) | yjhB | putative transporter |
| ? | CP009273 | = 4494499 | 71 (0.800) | coding (625/1218 nt) | yjhB | putative transporter | |||||
| * | ? | CP009273 | 4480841 = | 96 (1.040) | 3 (0.030) | 3/234 | NT | 3.4% | coding (116/999 nt) | idnR | transcriptional repressor, 5‑gluconate‑binding |
| ? | CP009273 | 4480879 = | 83 (0.960) | coding (78/999 nt) | idnR | transcriptional repressor, 5‑gluconate‑binding | |||||
| * | ? | CP009273 | 4474087 = | 81 (0.870) | 4 (0.040) | 3/242 | NT | 4.9% | coding (11/444 nt) | holC | DNA polymerase III, chi subunit |
| ? | CP009273 | 4474131 = | NA (NA) | intergenic (‑34/+126) | holC/pepA | DNA polymerase III, chi subunit/multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site‑specific recombination factor | |||||
| * | ? | CP009273 | 4409604 = | 113 (1.220) | 4 (0.050) | 4/238 | NT | 3.6% | intergenic (‑162/‑193) | ulaG/ulaA | L‑ascorbate 6‑phosphate lactonase/L‑ascorbate‑specific enzyme IIC permease component of PTS |
| ? | CP009273 | 4409636 = | 108 (1.220) | intergenic (‑194/‑161) | ulaG/ulaA | L‑ascorbate 6‑phosphate lactonase/L‑ascorbate‑specific enzyme IIC permease component of PTS | |||||
| * | ? | CP009273 | 4364065 = | 88 (0.950) | 3 (0.030) | 3/244 | NT | 3.4% | intergenic (‑14/+381) | yjeJ/epmB | uncharacterized protein/EF‑P‑Lys34 lysylation protein; weak lysine 2,3‑aminomutase |
| ? | CP009273 | 4364133 = | 83 (0.920) | intergenic (‑82/+313) | yjeJ/epmB | uncharacterized protein/EF‑P‑Lys34 lysylation protein; weak lysine 2,3‑aminomutase | |||||
| * | ? | CP009273 | = 4353246 | 91 (0.980) | 3 (0.030) | 3/238 | NT | 3.2% | coding (1614/1698 nt) | dsbD | fused thiol:disulfide interchange protein: activator of DsbC/conserved protein |
| ? | CP009273 | = 4353273 | 96 (1.090) | coding (1587/1698 nt) | dsbD | fused thiol:disulfide interchange protein: activator of DsbC/conserved protein | |||||
| * | ? | CP009273 | 4250326 = | 116 (1.250) | 4 (0.050) | 4/238 | NT | 3.8% | coding (78/255 nt) | yjbL | uncharacterized protein |
| ? | CP009273 | 4250400 = | 90 (1.020) | coding (152/255 nt) | yjbL | uncharacterized protein | |||||