| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2489741 | 120 (0.930) | 3 (0.030) | 4/230 | NT | 2.6% | intergenic (+90/+63) | USA300HOU_2350/USA300HOU_2351 | hypothetical protein/hypothetical lipoprotein |
| ? | CP000730 | = 2489759 | 120 (1.030) | intergenic (+108/+45) | USA300HOU_2350/USA300HOU_2351 | hypothetical protein/hypothetical lipoprotein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACCATTAGAATCTATTTCACAACTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2489596‑2489741‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacggtaaacTCTA‑‑TAATATGAATTAGGGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCACAGCCACTGAGAAATTTAAACACTATTGATTAGATGTCATCTTAGACAATAT < CP000730/2489759‑2489622 AACTATTAGAATCTATTTCACAACTTATATTGGCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTATAAAAGTACTATAAAACGTCAACTTTGATACTTTAAAAAAAGAAAAAAACGG < 2:1492399/141‑1 ACCATTAGAATCTATTTCACAACTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGT < 1:388517/141‑1 ACCATTAGAATCTACTTCACAACTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGT < 1:1591745/141‑1 CCATTAGAATATATTTCAAAACTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATAAAAAAAAAACGGTA < 2:1183274/141‑1 CATTAGAATCTATTTCACAACATATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTAAAAAAAAAAAAAAAACGGTAA < 2:1089499/141‑1 AATCTATTTCACAACTTATATTGTATAAGATGACATCTAATCAATAGAGTTTAAATTTCTCAGGGGCTGTTAATGAGGTTTAAAAGTACTATATAACGTAAACTTTGATACTTTAAAATACGCAAAAAACCGTAAACctta > 2:984380/1‑137 ATTTCACAACTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACTCTA‑‑TAATA < 1:475105/141‑1 ACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCACAGCCACTGAGAAATTTAAACACTATTGATTAGA < 2:1089594/138‑1 ACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCACAGCCACTGAGAAATTTAAACACTATTGATTAGA > 1:1089594/1‑138 CGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCACAGCCACTGAGAAATTTATACACTATTGATTAGATGTC > 2:841184/1‑141 aataaccCGGTAACCTCTC‑‑TAATATGCATTAGAGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCACCGCCCCTGAGAAATTTAAACACTATTGATTAGATGTCAT < 2:831031/134‑1 AAAACGGTAAACTCTA‑‑TAATATGAATTAGGGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCGCAGCCACTGAGAAATTTAAACACTATTGATTAGATGTCATCTT > 1:1302268/1‑141 AAAACGGTAAACTCTA‑‑TAATATGAATTAGGGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCACAGCCACTGAGAAATTTAAACACTATTGATTAGATGTCATCTT > 1:621291/1‑141 AAACGGTAAACTCTA‑‑TAATATGAATTAGGGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCACAGCCACTGAGAAATTTAAACACTATTGATTAGATGTCATtatg < 2:1263006/141‑5 ACGGTAAACTCTA‑‑TAATATGAATTAGGGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCACAGCCACTGAGAAATTTAAACACTATTGATTAGATGTCATCTTAGA < 1:1595803/141‑1 ACGGTAAACTCTA‑‑TAATATGAATTAGGGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCACAGCCACTGAGAAATTTAAACACTATTGATTAGATGTCATATTAGA > 2:1480881/1‑141 CGGTAAACTCTA‑‑TAATATGAATTAGGGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCACAGCCACTGAGAAATTTAAACACTATTGATTAGATGTCATCTTAGAC > 1:170682/1‑141 CGGTAAACTCTA‑‑TAATATGAATTAGGGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCACAGCCACTGAGAAATTTAAACACTATTGATTAGATGTCATCTTAGAC > 1:531905/1‑141 CGGTAAACTCTA‑‑TAATATGAATTAGGGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCACAGCCACTGAGAAATTTAAACACTATTGATTAGATGTCATCTTAGAC < 1:1010554/141‑1 GTAAACTCTA‑‑TAATATGAATTAGGGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCACAGCCACTGAGAAATTTAAACACTATTGATTAGATGTCATCTTAGACAA < 2:81635/141‑1 GTAAACTCTA‑‑TAATATGAATTAGGGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCACAGCCACTGAGAAATTTAAACACTATTGATTAGATGTCATCTTAGACAA < 1:152937/141‑1 AAACTCTA‑‑TAATATGAATTAGGGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCACAGCCACTGAGAAATTTAAACACTATTGATTAGATGTCATCTTAGACAATA < 2:1332587/141‑1 AACTCTA‑‑TAATATGAATTAGGGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCACAGCCACTGAGAAATTTAAACACTATTGATTAGATGTCATCTTAGACAATAT < 2:944300/141‑1 AACCATTAGAATCTATTTCACAACTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2489596‑2489741‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacggtaaacTCTA‑‑TAATATGAATTAGGGTTTACCGTTTTTTGCGTATTTTAAAGTATCAAAGTTTACGTTTTATAGTACTTTTAAACCTCATTCACAGCCACTGAGAAATTTAAACACTATTGATTAGATGTCATCTTAGACAATAT < CP000730/2489759‑2489622 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |