New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 2489741120 (0.930)3 (0.030) 4/230 NT 2.6% intergenic (+90/+63) USA300HOU_2350/USA300HOU_2351 hypothetical protein/hypothetical lipoprotein
?CP000730 = 2489759 120 (1.030)intergenic (+108/+45) USA300HOU_2350/USA300HOU_2351 hypothetical protein/hypothetical lipoprotein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 148 total aligned reads displayed.

CTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCCATTTGCATTTGGGTCTTTAAAACT  >  CP000730/2489619‑2489899
                                                                                                                                              |                                                                                                                                            
cTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑Taga                                                                                                                                              >  2:868358/1‑141 (MQ=255)
      ttGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgtttac                                                                                                                                        <  2:81635‑M2/141‑7 (MQ=255)
        gTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgtttaccg                                                                                                                                      >  1:170682‑M2/1‑133 (MQ=255)
        gTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgtttaccg                                                                                                                                      >  1:531905‑M2/1‑133 (MQ=255)
        gTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgtttaccg                                                                                                                                      <  1:1010554‑M2/141‑9 (MQ=255)
         tCTAATATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgtttaccgt                                                                                                                                     >  2:1480881‑M2/1‑132 (MQ=255)
         tCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgtttaccgt                                                                                                                                     <  1:1595803‑M2/141‑10 (MQ=255)
            aaGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgtttaccgtttt                                                                                                                                  >  1:621291‑M2/1‑129 (MQ=255)
            aaGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGCGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgtttaccgtttt                                                                                                                                  >  1:1302268‑M2/1‑129 (MQ=255)
               aTGACATCTAATCAATAGTGTTTAAATTTCTCAGGGGCGGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACTCTAATGCATATTA‑‑GAGAggttaccgggttatt                                                                                                                               <  2:831031‑M2/141‑16 (MQ=255)
               aTGAAATCTAAACAATAGTGTATAAATTTCTCAGTGGCTGTGAATGACGTTTAAAAGTACTATAAAACGTAAACTTTTATAATTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTAtt                                                                                                                               <  2:1126412/141‑1 (MQ=255)
               aTGAAATATAATCAATAATGTTTAAATTTCTAAGTTCCTATGAATGAGATTTAAAAGTACTATAAAACGTAAACATTGATACATTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTAtt                                                                                                                               <  2:769797/141‑1 (MQ=255)
                 gACATCTAATCAATAGTGTATAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACTCTA‑‑TAATATGAATTAGGgtttaccgttttttgcg                                                                                                                             >  2:841184‑M2/1‑124 (MQ=255)
                    aTCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTa                                                                                                                          <  1:1380265/141‑1 (MQ=255)
                     tCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACTCTA‑‑TAATATGAATTAGGgtttaccgttttttgcgt                                                                                                                            <  2:1089594‑M2/138‑19 (MQ=255)
                     tCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTaa                                                                                                                         >  1:223916/1‑141 (MQ=255)
                      cTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAAc                                                                                                                        >  1:350553/1‑141 (MQ=255)
                       tAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACt                                                                                                                       <  1:1523165/141‑1 (MQ=255)
                       aaaTCAATAGTATTTAAATTTCTCAGTTGCTTTTAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTAAAAATTCTCAATAAACGGTGATCCCTAATTCATATTA‑‑TACAGTTTACCGTTGTATTTTTTAAcg                                                                                                                       <  2:73333/140‑2 (MQ=255)
                         aTCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTg                                                                                                                     >  1:1229963/1‑141 (MQ=255)
                          tCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGc                                                                                                                    >  2:1034350/1‑141 (MQ=255)
                            aaTAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGcat                                                                                                                  <  1:1275151/141‑1 (MQ=255)
                             aTAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGcatc                                                                                                                 <  1:1496203/141‑1 (MQ=255)
                             aTAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGcatc                                                                                                                 >  1:1235448/1‑141 (MQ=255)
                              tAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGcatca                                                                                                                <  1:1111191/141‑1 (MQ=255)
                               aGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGcatcat                                                                                                               <  1:431448/141‑1 (MQ=255)
                                gtgtTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATa                                                                                                              <  1:417539/141‑1 (MQ=255)
                                   tttAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGtt                                                                                                           >  1:1540648/1‑141 (MQ=255)
                                     tAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTtat                                                                                                         <  1:981967/141‑1 (MQ=255)
                                      aaaTTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTtata                                                                                                        <  1:1363034/141‑1 (MQ=255)
                                        aTTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATAtt                                                                                                      <  2:1235448/141‑1 (MQ=255)
                                          ttCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTaa                                                                                                    <  1:1064277/141‑1 (MQ=255)
                                          ttCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACAAAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTaa                                                                                                    <  2:1255249/141‑1 (MQ=255)
                                          ttCTCAGTCGCTGTGAATGAGGTTTAAAAGTACTGTAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTaa                                                                                                    <  1:1534434/141‑1 (MQ=255)
                                           tctcAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTCCCGTTTTATTTTTTAACTTGCATCATAGTTATATTAAc                                                                                                   <  1:1291292/141‑1 (MQ=255)
                                            ctcAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACa                                                                                                  <  2:801001/141‑1 (MQ=255)
                                                 tGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACattatt                                                                                             >  2:1572267/1‑141 (MQ=255)
                                                  ggCTGTGAATGAGGTATAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTAttg                                                                                            <  1:1075025/141‑1 (MQ=255)
                                                   gCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTAttgt                                                                                           <  2:1078556/141‑1 (MQ=255)
                                                      gtgAATGAGGTTTAAAAGTACTATAATACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTgg                                                                                        <  2:1436701/141‑1 (MQ=255)
                                                      gtgAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTgg                                                                                        <  1:1299116/141‑1 (MQ=255)
                                                       tgAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGt                                                                                       >  1:36466/1‑141 (MQ=255)
                                                       tgAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGt                                                                                       <  1:304915/141‑1 (MQ=255)
                                                         aaTGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAg                                                                                     >  2:1187859/1‑141 (MQ=255)
                                                          aTGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTTTTTTTTATTATAGTTATATTAACATTATTGTTAGTCGt                                                                                    >  2:388433/1‑141 (MQ=255)
                                                          aTGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGt                                                                                    >  2:401177/1‑141 (MQ=255)
                                                              ggTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTgg                                                                                >  1:1316685/1‑141 (MQ=255)
                                                              ggTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTgg                                                                                >  1:494617/1‑141 (MQ=255)
                                                              ggTTTAAAAGTACTATAAAACCTAAACTTTGATACTATAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTgg                                                                                <  2:1382442/141‑1 (MQ=255)
                                                                    aaaGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGt                                                                          <  1:81635/141‑1 (MQ=255)
                                                                    aaaGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGt                                                                          >  2:874465/1‑141 (MQ=255)
                                                                    aaaGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCAGAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGt                                                                          <  1:1193924/141‑1 (MQ=255)
                                                                      aGTAATATAAAACGTAAACTTTGATACTTTAAAATACGAAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTaa                                                                        <  2:1219926/141‑1 (MQ=255)
                                                                        tACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAAGTTGCATCATAGTTATCTTAACATTAGTGTTGGTAGTTTgtctttaatcga                                                                      >  2:296988/1‑130 (MQ=255)
                                                                           tataAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCAtt                                                                   >  1:19602/1‑141 (MQ=255)
                                                                              aaaaCGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCt                                                                <  1:1632848/141‑1 (MQ=255)
                                                                                aaCGTATATTTTGATACTTTAAAATACGCAAAAAACGATAACCCCTTAAACATCTTA‑‑ATGAGTTTACCTTTTTAATTTTTAACTTGTATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTg                                                              <  1:66309/141‑1 (MQ=255)
                                                                                  cGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTc                                                            >  1:973454/1‑141 (MQ=255)
                                                                                     aaaCTTTGATACTTTAAAATACGCAAAAATCTGTAATCCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTTTTGTTAGTTTGGATCAGTAACCATGGCTTGGCCAg                                                         <  2:498288/141‑1 (MQ=255)
                                                                                      aaCTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGt                                                        >  1:515242/1‑141 (MQ=255)
                                                                                       aCTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGta                                                       <  2:715207/141‑1 (MQ=255)
                                                                                       aCTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGta                                                       >  1:192590/1‑141 (MQ=255)
                                                                                       aCTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGta                                                       <  1:371695/141‑1 (MQ=255)
                                                                                         tttGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGtata                                                     <  2:1461927/141‑1 (MQ=255)
                                                                                              tACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCaa                                                <  2:1540648/141‑1 (MQ=255)
                                                                                               aCTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAAc                                               >  2:1307964/1‑141 (MQ=255)
                                                                                                cTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAAcc                                              >  2:525131/1‑141 (MQ=255)
                                                                                                  ttAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGt                                            <  1:836538/141‑1 (MQ=255)
                                                                                                     aaaTACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGTTCAGTAACTATTGCTTGTCCAGTATAATCAACCGttcc                                         >  2:1316142/1‑139 (MQ=255)
                                                                                                     aaaTACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTAc                                         >  1:1617078/1‑141 (MQ=255)
                                                                                                        tACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAAt                                      <  2:152937/141‑1 (MQ=255)
                                                                                                        tACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAAt                                      >  1:1011326/1‑141 (MQ=255)
                                                                                                        tACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAAt                                      <  2:1128705/141‑1 (MQ=255)
                                                                                                         aCGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAAtt                                     <  2:1656579/141‑1 (MQ=255)
                                                                                                         aCGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAAtt                                     <  2:1249829/141‑1 (MQ=255)
                                                                                                          cGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTTCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTATCCATTGCTTGTCCAGTATAATCAACCGTTACAATTg                                    >  2:1453451/1‑141 (MQ=255)
                                                                                                          cGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTg                                    >  1:777298/1‑141 (MQ=255)
                                                                                                             aaaaaaCGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAat                                 <  2:22495/141‑1 (MQ=255)
                                                                                                             aaaaaaCGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAat                                 <  2:495527/141‑1 (MQ=255)
                                                                                                              aacaaCGGTAAACTCTAATACATATTA‑‑TAGAGTTTACCGTTTTATTTTTTATCTTGCATCATAGTTATATTAACATTATTGTTGGTAGTATGCATCAGTAACAATTTCTTGTCCAGTATAATCATCCGTTACAATTGaaga                                <  2:772900/138‑3 (MQ=255)
                                                                                                              aaaaaCGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAata                                >  1:285796/1‑141 (MQ=255)
                                                                                                                 aaCGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATAttt                             >  2:683155/1‑141 (MQ=255)
                                                                                                                     gTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCca                         <  2:144607/141‑1 (MQ=255)
                                                                                                                     gTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCca                         >  1:601143/1‑141 (MQ=255)
                                                                                                                       aaaCCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCcatt                       <  1:331341/141‑1 (MQ=255)
                                                                                                                           ccTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCcatttgca                   <  1:447939/141‑1 (MQ=255)
                                                                                                                              aaTTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAAt                                      >  1:1460890/1‑119 (MQ=255)
                                                                                                                               aTTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCcatttgcatttg               <  1:1013019/141‑1 (MQ=255)
                                                                                                                               aTTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCcatttgcatttg               <  2:317873/141‑1 (MQ=255)
                                                                                                                                 tCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCCATTTGCATTTggg             <  1:1034350/141‑1 (MQ=255)
                                                                                                                                 tCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCCATTTGCATTTggg             <  2:1617078/141‑1 (MQ=255)
                                                                                                                                 tCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCCATTTGCATTTggg             <  1:832368/141‑1 (MQ=255)
                                                                                                                                    tatta‑‑tAGAgtttaccgttttttgcgtattttaaagtatcaaagtttacgttttatagtacttttaaacctcattcacagccactgagaaatttaaacactattgattagatgtcatcttagacaatataagttgtgaaat          <  1:475105‑M2/141‑133 (MQ=255)
                                                                                                                                     atta‑‑tAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCCATTTGCATTTGGGTCtt         <  2:1517879/141‑1 (MQ=255)
                                                                                                                                       ta‑‑taGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCCATTTGCATTTGGGTCTTTa       <  1:713848/141‑1 (MQ=255)
                                                                                                                                        a‑‑taGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCCATTTGCATTTGGGTCTTTaa      >  1:702951/1‑141 (MQ=255)
                                                                                                                                            agagTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCCATTTGCATTTGGGTCTTTa       <  1:1021350/138‑1 (MQ=255)
                                                                                                                                            agagTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCCATTTGCATTTGGGTCTTTa       >  2:1021350/1‑138 (MQ=255)
                                                                                                                                              agTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCCATTTGCATTTGGGTCTTTAAAACt  >  1:775678/1‑141 (MQ=255)
                                                                                                                                              agTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCCATTTGCATTTGGGTCTTTAAAACt  <  2:1229963/141‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                            
CTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCCATTTGCATTTGGGTCTTTAAAACT  >  CP000730/2489619‑2489899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.