| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2569653 = | 129 (1.000) | 6 (0.050) | 5/236 | NT | 5.0% | intergenic (+5/+87) | fmtA/USA300HOU_2430 | FmtA protein/possible epimerase/dehydratase |
| ? | CP000730 | 2569712 = | 109 (0.910) | intergenic (+64/+28) | fmtA/USA300HOU_2430 | FmtA protein/possible epimerase/dehydratase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAGCGCAAGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2569801‑2569653‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagtctttATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTGCGCTTTAAACTTCTCATTGCTTACGCCACGTTCAAATGGTTGCGCAGGTTGAAT > CP000730/2569712‑2569850 AAGCGCAAGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAAC < 1:1517853/141‑1 AGCGCAAGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACA > 2:1478995/1‑141 AGCGCAAGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACA < 2:801901/141‑1 CGCAAGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAa > 2:750000/1‑140 CGCAAGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAG < 1:761440/141‑1 GCAAGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGT > 2:829115/1‑141 GCAAGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATAGATTATCAAATGCACGGCTCGAACAAGT > 2:1497911/1‑141 CAAGGTGGTACTCTGATTTATCAACCTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGCACAAGTC < 2:1401479/141‑1 CAAGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTC > 2:475000/1‑141 CAAGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTC < 1:1386078/141‑1 CAAGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTC > 1:1024001/1‑141 AAGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTCT < 1:194307/141‑1 AAGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTCT < 2:1059592/141‑1 AAGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTCT < 1:1474814/141‑1 AAGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTCT > 2:852833/1‑141 AGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTCTT < 2:1369780/141‑1 AGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTCTT > 1:610291/1‑141 AGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTCTT > 1:15387/1‑141 GGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTACCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTCTTT < 1:1652866/141‑1 CGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTT > 1:814262/1‑141 GACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTG > 2:99951/1‑141 ACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTGC > 2:214784/1‑141 GGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTGCGCTT > 1:727345/1‑141 GGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTGCGCTT > 1:1261061/1‑141 CGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTGCGCTTTAA > 2:1167173/1‑141 AAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTGCGCTTTAATCTTCTCATTGCTTACGCCACGTTCAAATGGTTGCGCAGG < 1:1087804/141‑1 AAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTGCGCTTTAAACTTCTCATTGCTTACGCCACGTTCAAATGGTTGCGCAGG < 1:1369780/141‑1 AAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTGCGCTTTAAACTTCTCATTGCTTACGCCACGTTCAAATGGTTGCGCAGG < 1:1383933/141‑1 TCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTGCGCTTTAAACTTCTCATTGCTTACGCCACGTTCAAATGGTTGCGCAGGTTG < 1:192680/141‑1 CTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTGGCGCTTTAAACGTCTCATTGCTTACGCCACGTTCAAATGGTTGCGCAGGTTGA > 1:989854/1‑141 aTATTCTTTGAATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTGCGCTTTAAACTTCTCATTGCTTACGCCACGTTCAAATGGTTGAGCAGGTTGAAT > 2:1206051/2‑141 TTATTCTTTGTATATTAAACGTATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTGCGCTTTAAACTTCTCATTGCTTACGCCACGTTCAAATGGTTGCGCAGGTTGAAT < 2:1073507/141‑1 AAGCGCAAGGTGGTACTCTGATTTATCAAACTTGGAAAGATGGCATGAATCCAATTAAATAATAATTTATCCGTTTAATATACAAAGAATAAAGACTTGGTCGAATCGTGGATGATATATTATCAAACGCACGGCTCGAACAAGTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2569801‑2569653‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagtctttATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTGCGCTTTAAACTTCTCATTGCTTACGCCACGTTCAAATGGTTGCGCAGGTTGAAT > CP000730/2569712‑2569850 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |