New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2653484 =115 (0.890)5 (0.040) 5/248 NT 4.6% coding (18/153 nt) USA300HOU_2506 hypothetical protein
?CP000730 2653543 = 97 (0.770)coding (77/153 nt) USA300HOU_2506 hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 132 total aligned reads displayed.

GCTCAAATAGATATTTTGAAAATGTTAATGCATGATCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGAC  >  CP000730/2653344‑2653624
                                                                                                                                            |                                                                                                                                             
    aaaTAGATATTTTGAAAATGTTAATGCATGATCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCt                                                                                                                                           >  2:77051/1‑141 (MQ=255)
    aaaTAGATATTTTGAAAATGTTAATGCATGATCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCt                                                                                                                                           >  1:1109439/1‑141 (MQ=255)
       tAGATATTTTGAAAATGTTAATGCATGATCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTaca                                                                                                                                        >  2:1421820/1‑141 (MQ=255)
          atatTTTGAAAATGTTAATGCATGATCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCg                                                                                                                                     <  1:105436/141‑1 (MQ=255)
          atatTTTGAAAATGTTAATGCATGATCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCg                                                                                                                                     <  1:736643/141‑1 (MQ=255)
          atatTTTGAAAATGTTAATGCATGATCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCg                                                                                                                                     <  2:524326/141‑1 (MQ=255)
            atTTTGAAAATGTTAATGCATGATCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGaa                                                                                                                                   <  2:362588/141‑1 (MQ=255)
              tttGAAAATGTTAATGCATGATCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCt                                                                                                                                           <  2:429461/131‑1 (MQ=255)
              tttGAAAATGTTAATGCATGATCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCt                                                                                                                                           >  1:429461/1‑131 (MQ=255)
              tttGAAAATGTTAATGCATGATCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGaaaa                                                                                                                                 <  1:889565/141‑1 (MQ=255)
              tttGAAAATGTTAATGCATGATCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGaaaa                                                                                                                                 <  1:593786/141‑1 (MQ=255)
                         tAATGCATGATCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTATGCATTCGCTACGCAAACACGATGATAAATAGGCGACCTAAAAAAAAAAAAAAAAATCCCCTCa                                                                                                                      <  2:203297/141‑1 (MQ=255)
                         tAATGCATGATCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCa                                                                                                                      >  1:1599412/1‑141 (MQ=255)
                                 gATCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCg                                                                                                             <  2:1411802/141‑1 (MQ=255)
                                 gATCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCg                                                                                                             <  1:250572/141‑1 (MQ=255)
                                  ttaaattggagtagaagcgagggtgtcggtcatttcattaatttattagttgattttgcatttttttgctgtaaagttgttataatacagttaacaggaattagcaTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGa                                                                                                            >  2:1048862‑M1/107‑141 (MQ=255)
                                  aTCGTTACTTAGCCTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGa                                                                                                            <  2:680330/141‑1 (MQ=255)
                                  aTCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGa                                                                                                            <  2:680118/141‑1 (MQ=255)
                                   tCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGag                                                                                                           >  2:873130/1‑141 (MQ=255)
                                   tCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGag                                                                                                           <  2:1324468/141‑1 (MQ=255)
                                    cGTTACTTAGACTAATGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGagt                                                                                                          <  1:1373699/141‑1 (MQ=255)
                                    cGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATCTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGagt                                                                                                          >  1:755495/1‑141 (MQ=255)
                                     gTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGagta                                                                                                         >  2:290738/1‑141 (MQ=255)
                                            gtagaagcgagggtgtcggtcatttcattaatttattagttgattttgcatttttttgctgtaaagttgttataatacagttaacaggaattagcaTAGATACAC‑‑‑‑‑‑AAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTgg                                                                                            >  2:613686‑M1/97‑141 (MQ=255)
                                               gaagcgagggtgtcggtcatttcattaatttattagttgattttgcatttttttgctgtaaagttgttataatacagttaacaggaattagcaTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGAt                                                                                               <  2:545896‑M1/48‑1 (MQ=255)
                                                tAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGAtt                                                                                              <  1:904838/141‑1 (MQ=255)
                                                  aaGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTACTCGCAA‑TAGTGAGGGGAtttt                                                                                            <  2:387031/141‑3 (MQ=39)
                                                  aaGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAACCTTCCTATCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTgg                                                                                            <  1:451247/141‑1 (MQ=255)
                                                   aGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGgt                                                                                           <  1:93904/141‑1 (MQ=255)
                                                       gacATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTAt                                                                                       >  2:449696/1‑141 (MQ=255)
                                                        acATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGCAAAAAATCCCCTCACTA‑TTGCGTGTAGTGAGGGGGTTGGTGTATc                                                                                      >  2:588560/1‑141 (MQ=255)
                                                        acATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATc                                                                                      >  1:643290/1‑141 (MQ=255)
                                                        acATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCG‑AAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCt                                                                                     >  1:801937/1‑141 (MQ=255)
                                                         cATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCt                                                                                     >  2:980848/1‑141 (MQ=255)
                                                         cATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCt                                                                                     >  2:1189870/1‑141 (MQ=255)
                                                           tttGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTAt                                                                                   >  1:231428/1‑141 (MQ=255)
                                                           tttGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTAt                                                                                   <  1:799979/141‑1 (MQ=255)
                                                            ttGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGa                                                                                                                                    >  2:1552494/1‑92 (MQ=255)
                                                            ttGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGa                                                                                                                                    <  1:1552494/92‑1 (MQ=255)
                                                            ttGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTCGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATg                                                                                  <  2:1300268/141‑1 (MQ=255)
                                                             tGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGc                                                                                 >  2:424475/1‑141 (MQ=255)
                                                             tGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGc                                                                                 <  1:229546/141‑1 (MQ=255)
                                                             tGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGc                                                                                 >  1:259977/1‑141 (MQ=255)
                                                             ggtcatttcattaatttattagttgattttgcatttttttgctgtaaagttgttataatacagttaacaggaattagcaTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGc                                                                                 >  1:545896‑M1/80‑141 (MQ=255)
                                                              gtcatttcattaatttattagttgattttgcatttttttgctgtaaagtcgttataatacagttaacaggaattatcaTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCt                                                                                >  2:1461672‑M1/79‑141 (MQ=255)
                                                              gATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCa                                                                                                                      <  2:83001/104‑1 (MQ=255)
                                                              gATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCa                                                                                                                      >  1:83001/1‑104 (MQ=255)
                                                                tGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTACGcaac                                                                              >  2:481804/1‑138 (MQ=255)
                                                                 gCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGTCTACGCAAACAAGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAAt                                                                             <  2:604697/141‑1 (MQ=255)
                                                                 gCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAAt                                                                             <  1:1347522/141‑1 (MQ=255)
                                                                   aTGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTc                                                                           >  1:594088/1‑141 (MQ=255)
                                                                   aTGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTc                                                                           <  1:753550/141‑1 (MQ=255)
                                                                    tGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTcc                                                                          <  2:974713/141‑1 (MQ=255)
                                                                     gTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTactcgca                                                                                                             >  2:521780/1‑100 (MQ=255)
                                                                     gTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTactcgca                                                                                                             <  1:521780/106‑7 (MQ=255)
                                                                     gTATCGTGCACTTATTTAGTGGTACTCTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGAAAAAAAAAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCt                                                                         <  2:1314880/141‑1 (MQ=255)
                                                                       aTCGTTCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAAGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTAGTGTATCTATGCTAATTCCTGt                                                                       <  2:1647238/141‑1 (MQ=255)
                                                                       aTCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGATAATTCCTGt                                                                       >  1:549507/1‑141 (MQ=255)
                                                                          gTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTaa                                                                    <  1:690998/141‑1 (MQ=255)
                                                                           tGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAAc                                                                   <  2:1079827/141‑1 (MQ=255)
                                                                             cACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTg                                                                 <  1:1126427/141‑1 (MQ=255)
                                                                              aCTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTg                                                                                                      >  1:1325611/1‑103 (MQ=255)
                                                                                 tATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGtatt                                                             <  1:1272854/141‑1 (MQ=255)
                                                                                 tATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGtatt                                                             >  1:1648268/1‑141 (MQ=255)
                                                                                     tAGTGGTACTGTGTTGACGCATTGGCTACGCAAACACGATTATAAATATTCGACCTATCTACTCCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATaa                                                         <  1:908438/141‑1 (MQ=255)
                                                                                      cggttgccggtgtTTAGGCTGTGGCTCCGCTGTCTCGATGATATGTGGGCGAAGTAGATACAAAGAAAAAAATCCCCTCTCTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATaac                                                        <  2:941488/132‑1 (MQ=255)
                                                                                      aGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATaac                                                        <  1:1185059/141‑1 (MQ=255)
                                                                                      aGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATaac                                                        <  1:923658/141‑1 (MQ=255)
                                                                                       gTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAACAAATACAATCCCTC‑TTGTGAGTAGCCGCGGTCTCGGCGGATGTATGCTAATTCCTGTTAACTGTATTATaaca                                                       >  1:1073983/1‑141 (MQ=255)
                                                                                       gTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATaaca                                                       >  2:1091310/1‑141 (MQ=255)
                                                                                       gTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATaaca                                                       >  2:401038/1‑141 (MQ=255)
                                                                                       gTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATaaca                                                       >  2:719161/1‑141 (MQ=255)
                                                                                        tGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATaacaa                                                      >  1:1436688/1‑141 (MQ=255)
                                                                                               gtgtTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGc                                                                                 >  2:71506/1‑107 (MQ=255)
                                                                                                tgtTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAg                                              >  1:507128/1‑141 (MQ=255)
                                                                                                   ttACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCaa                                           >  2:1086631/1‑141 (MQ=255)
                                                                                                      cGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCaaaac                                        >  2:1150528/1‑140 (MQ=255)
                                                                                                      cGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCaaaaa                                        >  1:288279/1‑141 (MQ=255)
                                                                                                                 cGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTaa                                                                    >  2:668492/1‑102 (MQ=255)
                                                                                                                 cGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTaa                                                                    <  1:668492/102‑1 (MQ=255)
                                                                                                                      acacGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAAAATAAAAAAAAAAAAATGCAAAATCAACta                        <  2:1436688/141‑1 (MQ=255)
                                                                                                                       cacGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACtaa                       >  1:1228187/1‑141 (MQ=255)
                                                                                                                         cGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACtaata                     <  1:1290704/141‑1 (MQ=255)
                                                                                                                          gatgatAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTCACAGCAAAAAAATGCAAAATCAACtaataa                    <  2:1488922/141‑1 (MQ=255)
                                                                                                                           atgatAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATaaa                   >  2:539479/1‑141 (MQ=255)
                                                                                                                           atgatAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATaaa                   >  2:1118249/1‑141 (MQ=255)
                                                                                                                             gatAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAAtt                 >  2:875182/1‑141 (MQ=255)
                                                                                                                              atAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTa                >  1:867770/1‑141 (MQ=255)
                                                                                                                               tAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTaa               <  1:1048813/141‑1 (MQ=255)
                                                                                                                                aaaTAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGTGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGAAAAAAAATGCAAAATCAACTAATAAATTaat              <  2:238429/141‑1 (MQ=255)
                                                                                                                                   tAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGc                                                                                 <  2:546417/71‑1 (MQ=255)
                                                                                                                                   tAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGc                                                                                 >  1:546417/1‑71 (MQ=255)
                                                                                                                                   tAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTaatgaa           >  2:1405300/1‑141 (MQ=255)
                                                                                                                                   tAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTaatgaa           >  1:1538242/1‑141 (MQ=255)
                                                                                                                                   tAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTaatgaa           <  2:1548769/141‑1 (MQ=255)
                                                                                                                                         aCCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGAcc     <  1:1655023/141‑1 (MQ=255)
                                                                                                                                         aCCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATAAAATGAcc     >  1:1000189/1‑141 (MQ=255)
                                                                                                                                           cTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGa   >  1:633427/1‑141 (MQ=255)
                                                                                                                                           cTAGCTACACCGAAAAAAATCCCCTCACCA‑TGGCGAGTAGTGAGGGGATTGGTGCACCTATGCTAATTCCTGTTAACTGTATTATAACAAATTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGa   <  2:464308/141‑1 (MQ=255)
                                                                                                                                            TAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGac  <  1:36551‑M1/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                             
GCTCAAATAGATATTTTGAAAATGTTAATGCATGATCGTTACTTAGACTAAAGACGACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTA‑TTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGAC  >  CP000730/2653344‑2653624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.