New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 2726829150 (1.160)3 (0.020) 3/244 NT 2.1% intergenic (‑256/+86) USA300HOU_2581/USA300HOU_2582 hypothetical protein/hypothetical protein
?CP000730 = 2726876 130 (1.050)intergenic (‑303/+39) USA300HOU_2581/USA300HOU_2582 hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 158 total aligned reads displayed.

TAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCACCAAATTTCAATAAATGGACCATCAATAAATATAAACG  >  CP000730/2726737‑2727016
                                                                                                                                           |                                                                                                                                             
tAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGCCATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATCt                                                                                                                                              <  2:164087‑M2/141‑2 (MQ=255)
tAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATCt                                                                                                                                              >  1:503602‑M2/1‑140 (MQ=255)
tAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATCt                                                                                                                                              <  1:1367105‑M2/141‑2 (MQ=255)
 aaaaTCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATCtg                                                                                                                                             <  1:788324‑M2/141‑3 (MQ=255)
 aaaaTCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATCtg                                                                                                                                             <  1:1279233‑M2/141‑3 (MQ=255)
 aaaaTCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATCtg                                                                                                                                             >  1:165036‑M2/1‑139 (MQ=255)
  aaaTCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATCtgt                                                                                                                                            <  1:819958‑M2/141‑4 (MQ=255)
  aaaTCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATCtgt                                                                                                                                            <  2:1545952‑M2/141‑4 (MQ=255)
    aTCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATCtgtgc                                                                                                                                          >  2:1208768‑M2/1‑136 (MQ=255)
    aTCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATCtgtgc                                                                                                                                          >  2:344633‑M2/1‑136 (MQ=255)
      cACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCat                                                                                                                                       >  1:1441323/1‑141 (MQ=255)
      cACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCat                                                                                                                                       <  1:1292276/141‑1 (MQ=255)
      cACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCat                                                                                                                                       >  1:1555263/1‑141 (MQ=255)
      cACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCat                                                                                                                                       <  2:1298351/141‑1 (MQ=255)
       aCTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCata                                                                                                                                      >  1:902704/1‑141 (MQ=255)
        cTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCatat                                                                                                                                     <  2:609975/141‑1 (MQ=255)
            tATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATc                                                                                                                                 >  2:1455555/1‑141 (MQ=255)
                  aaCTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTa                                                                                                                           >  2:1433495/1‑141 (MQ=255)
                     tCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTAtct                                                                                                                        <  2:284250/141‑1 (MQ=255)
                         ccTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAAt                                                                                                                    <  2:1435545/141‑1 (MQ=255)
                          cTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATc                                                                                                                   >  2:1295399/1‑141 (MQ=255)
                          cTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATc                                                                                                                   <  1:113463/141‑1 (MQ=255)
                           ttGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCt                                                                                                                  >  2:581792/1‑141 (MQ=255)
                           ttGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCt                                                                                                                  >  2:791916/1‑141 (MQ=255)
                             gTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTaa                                                                                                                >  2:116558/1‑141 (MQ=255)
                             gTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTaa                                                                                                                <  2:246227/141‑1 (MQ=255)
                              ttttACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCGGTATCTCTGCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAAc                                                                                                               >  1:68200/1‑141 (MQ=255)
                                ttacattacaGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACgc                                                                                                             >  2:694958/1‑140 (MQ=255)
                                ttacattacaGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGt                                                                                                             <  1:1531526/141‑1 (MQ=255)
                                  acattacaGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCt                                                                                                           >  2:834884/1‑141 (MQ=255)
                                   cattacaGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCtt                                                                                                          >  2:1125883/1‑141 (MQ=255)
                                   cattacaGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCtt                                                                                                          <  2:192085/141‑1 (MQ=255)
                                     ttacaGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTtaa                                                                                                        <  1:1366382/141‑1 (MQ=255)
                                        caGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTtaacta                                                                                                     >  1:119549/1‑141 (MQ=255)
                                           aaaTTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTaactaact                                                                                                  <  2:973402/141‑1 (MQ=255)
                                            aaTTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACtt                                                                                                 >  2:629711/1‑141 (MQ=255)
                                            aaTTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACtt                                                                                                 >  2:629755/1‑141 (MQ=255)
                                            aaTTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACtt                                                                                                 <  2:127798/141‑1 (MQ=255)
                                            aaTTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACtt                                                                                                 <  2:127850/141‑1 (MQ=255)
                                             aTTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACttg                                                                                                <  1:1081505/141‑1 (MQ=255)
                                             aTTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACttg                                                                                                <  1:436606/141‑1 (MQ=255)
                                             aTTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGACGATGTATCGCTCATCATAAT‑CAACGATCGTGGCGGTAATAAATACCTATCTCCATCTAACGTCTTAACTAACttg                                                                                                >  1:1074125/1‑141 (MQ=255)
                                              ttAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACttgt                                                                                               >  1:655334/1‑141 (MQ=255)
                                              ttAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACttgt                                                                                               <  1:969628/141‑1 (MQ=255)
                                               tAACAGTAGCTATTAAAATTTTATTTTCCAGCAATAAAAAAGCACAAATATTTTTATTGAGGCAACTGAAGGCCTTCTC‑TTCATAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACttgttg                                                                                             <  2:34352/141‑1 (MQ=255)
                                                aaCAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACttgttg                                                                                             <  1:1384741/141‑1 (MQ=255)
                                                  cAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTa                                                                                           <  1:705490/141‑1 (MQ=255)
                                                  cAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTa                                                                                           >  1:1014799/1‑141 (MQ=255)
                                                  cAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTa                                                                                           >  2:329787/1‑141 (MQ=255)
                                                     tAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCt                                                                                        <  1:767060/141‑1 (MQ=255)
                                                       gCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTg                                                                                      <  2:1025234/141‑1 (MQ=255)
                                                       gCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTg                                                                                      >  2:109381/1‑141 (MQ=255)
                                                       gCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTg                                                                                      >  2:888694/1‑141 (MQ=255)
                                                         gATTAAAATTTTAGTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTa                                                                                    <  2:760756/141‑1 (MQ=255)
                                                          aTTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTaa                                                                                   >  2:1087575/1‑141 (MQ=255)
                                                            tAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTaaaa                                                                                 <  2:219196/141‑1 (MQ=255)
                                                             aaaaTTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAAt                                                                                <  2:1376941/141‑1 (MQ=255)
                                                              aaaTTTTAGTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATc                                                                               <  2:549080/141‑1 (MQ=255)
                                                                 ttttattttCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTa                                                                            >  2:492735/1‑141 (MQ=255)
                                                                      ttttCCAGCAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCAt                                                                       <  2:635642/141‑1 (MQ=255)
                                                                        ttCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAg                                                                     <  1:1419118/141‑1 (MQ=255)
                                                                        ttCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAg                                                                     >  2:149465/1‑141 (MQ=255)
                                                                         tCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATCtgtgcgtttttattgttggaaaaaaaaattttaactgctattgttaatttctgtaatgtaaaacaaggttgaat                                                                     <  1:1222771‑M2/141‑75 (MQ=255)
                                                                         tCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGa                                                                    <  1:196277/141‑1 (MQ=255)
                                                                          ccAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGaa                                                                   <  1:1125883/141‑1 (MQ=255)
                                                                          ccAACAATAAAAACGCACAAATATTTTTATTGAGGCAACTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTAGCTATTTATCTCAATCTAGCGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATTGaa                                                                   <  2:1420040/141‑1 (MQ=255)
                                                                                aTAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTaactaact                                                                                                  <  1:343270/104‑1 (MQ=255)
                                                                                  aaaaaCGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGTATGCGCAac                                                           <  1:1458714/141‑1 (MQ=255)
                                                                                  aaaaaCGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAac                                                           >  2:1054185/1‑141 (MQ=255)
                                                                                  aaaaaCGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAac                                                           <  1:997847/141‑1 (MQ=255)
                                                                                   aaaaCGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAaca                                                          <  1:834884/141‑1 (MQ=255)
                                                                                    aaaCGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAacac                                                         <  1:629711/141‑1 (MQ=255)
                                                                                    aaaCGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAacac                                                         <  1:629755/141‑1 (MQ=255)
                                                                                     aaCGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACt                                                        >  2:1461995/1‑141 (MQ=255)
                                                                                      aCGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTa                                                       <  1:351649/141‑1 (MQ=255)
                                                                                       cGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTAt                                                      <  2:769011/141‑1 (MQ=255)
                                                                                         cacaAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCa                                                    >  1:1601850/1‑141 (MQ=255)
                                                                                            aaaTATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACgg                                                 <  2:1531812/141‑1 (MQ=255)
                                                                                              atatTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTa                                               >  1:530260/1‑141 (MQ=255)
                                                                                               tatTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTAc                                              >  1:728784/1‑141 (MQ=255)
                                                                                                 tttttATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATT‑TGTGCATATTATCTATTTATCTGAATCTAACGTCTTAACTAACTTGGTGATTCTTGTAAAATCTTATCCATAGAATGCGCACCACTATCACGGTACAt                                            >  2:579954/1‑141 (MQ=255)
                                                                                                  ttttATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACAtc                                           >  2:502799/1‑141 (MQ=255)
                                                                                                     tATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCa                                        <  1:581792/141‑1 (MQ=255)
                                                                                                           tttttcTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCACCAAAt                                  >  2:1386802/6‑141 (MQ=255)
                                                                                                           ggCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAGCTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCACCAAAt                                  >  1:100861/1‑141 (MQ=255)
                                                                                                           ggCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCACCAAAt                                  >  1:1585278/1‑141 (MQ=255)
                                                                                                            gCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCACCAAAtt                                 <  1:967672/141‑1 (MQ=255)
                                                                                                               gCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCATCAAATTTCa                              <  1:1455555/141‑1 (MQ=255)
                                                                                                                cTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCACCAAATTTCaa                             <  1:237669/141‑1 (MQ=255)
                                                                                                                cTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATATCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCACCAAATTTCaa                             <  1:920146/141‑1 (MQ=255)
                                                                                                                  gTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCACCAAATTTCAATa                           >  1:397269/1‑141 (MQ=255)
                                                                                                                          tctcATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCACCAAATTTCAATAAATGGAcc                   <  1:39829/141‑1 (MQ=255)
                                                                                                                                tGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCACCAAATTTCAATAAATGGACCATCaat             <  1:1521513/141‑1 (MQ=255)
                                                                                                                                    aaaaTATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCACCAAATTTCAATAAATGGACCATCaataaat         <  1:570442/141‑1 (MQ=255)
                                                                                                                                     aaaTATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCACCAAATTTCAATAAATGGACCATCaataaata        <  2:886541/141‑1 (MQ=255)
                                                                                                                                        tatC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCACCAAATTTCAATAAATGGACCATCAATAAATATaa     <  1:1317967/141‑1 (MQ=255)
                                                                                                                                        tatC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCACCAAATTTCAATAAATGGACCATCAATAAATATaa     <  2:563006/141‑1 (MQ=255)
                                                                                                                                          tC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCACCAAATTTCAATAAATGGACCATCAATAAATATAAAc   >  2:608215/1‑141 (MQ=255)
                                                                                                                                           c‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAGCACTATCACGGTACATCTCACCAAATTTCAATAAATGGACCATCAATAAATATAAACg  >  2:871700/1‑141 (MQ=255)
                                                                                                                                           c‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCACCAAATTTCAATAAATGGACCATCAATAAATATAAACg  >  2:316856/1‑141 (MQ=255)
                                                                                                                                           |                                                                                                                                             
TAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAAATATTTTTATTGAGGCAGCTGTATCGCTTCTCATTGTAAAAATATC‑TGTGCATATTATCTATTTATCTCAATCTAACGTCTTAACTAACTTGTTGTATCTTGTAAAATCTTATCCATAGAATGCGCAACACTATCACGGTACATCTCACCAAATTTCAATAAATGGACCATCAATAAATATAAACG  >  CP000730/2726737‑2727016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.