| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1456948 = | 80 (1.000) | 17 (0.220) +GTTTT |
6/258 | 10.6 | 19.2% | intergenic (‑62/‑182) | USA300HOU_1352/arlR | hypothetical protein/IS200 transposase |
| ? | CP000730 | = 1918540 | 69 (0.860) | intergenic (‑219/+240) | pckA/USA300HOU_1780 | transposase/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1456999‑1456948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTGGTCAGCCAACCAAAATAATCAACACGAGGAGATGCTATTTAAT < CP000730/1918540‑1918404 ||||| TACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTATACTGCTTTTGCTCTTTATAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAAGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGA > 1:19185/1‑141 AACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAGAAAAAATGCATCTCTAAGTACTAGAATAAATA > 2:619401/1‑141 AAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGATTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTGG > 2:538927/1‑141 AAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTGGT > 1:696030/1‑141 AACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTGGTCAGCCAAC > 1:37790/1‑141 TAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTGGTCAGCCAACCAAA > 2:821154/1‑141 GGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTGGTCAGCCAACCAAAATAATCAACACGAG < 2:19185/141‑1 GGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTGGTCAGCCAACCAAAATAATCAACACGAG > 1:883557/1‑141 GGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTGGTCAGCCAACCAAAATAATCAACACGAG > 1:324746/1‑141 TTTACTGCTTTTGTTTTTTGTATAAAGACAACCATACGCTATGCGTATGGTTCAGAAACGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTACTAGAATAAATATTGGTCAGCCAACCAAAATAATCAACACGAGaa > 2:733968/1‑139 TTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTGGTCAGCCAACCAAAATAATCAACAC < 1:839351/135‑1 TTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTGGTCAGCCAACCAAAATAATCAACAC > 2:839351/1‑135 ACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTGGTCAGCCAACCAAAATAATCAACACGAGGAGAT > 1:465403/1‑141 TTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTGGTCAGCCAACCAAAATAATCAACACGAGGAGATGCTATT < 1:82362/141‑1 TGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAACCGGTTCTACCATTGTCACAAAAAATGCATCTCTCCGTGCTAGAGTAAATATTGGTCAGCCAACCAAAATAATCAACACGAGGAGATGCTATTTA < 2:955309/141‑1 TGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTGGTCAGCCAACCAAAATAATCAACACGAGGAGATGCTATTTA < 2:905878/141‑1 TGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTAACAAAAAATGCATCTCTACGTGCTAGAATAAATATTGGTCAGCCAACCAAAATAATCAACACGAGGAGATGCTATTTA < 2:296109/141‑1 GTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTGGTCAGCCAACCAAAATAATCAACACGAGGAGATGCTATTTAA > 1:525204/1‑141 TTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTGGTCAGCCAACCAAAATAATCAACACGAGGAGATGCTATTTAAT < 2:734142/141‑1 ||||| TACAAAAAACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1456999‑1456948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTGGTCAGCCAACCAAAATAATCAACACGAGGAGATGCTATTTAAT < CP000730/1918540‑1918404 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |