New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1456948 =	80 (1.000)	17 (0.220) +GTTTT	6/258	10.6	19.2%	intergenic (‑62/‑182)	USA300HOU_1352/arlR	hypothetical protein/IS200 transposase
	?	CP000730	= 1918540	69 (0.860)					intergenic (‑219/+240)	pckA/USA300HOU_1780	transposase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCACTCATTTAAT  >  CP000730/1918403‑1918677                                                                                                                                          |                                                                                                                                          cATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTa                                                                                                                                        <  1:999645/141‑1 (MQ=32)      aaTAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAagag                                                                                                                                   <  1:832924/141‑1 (MQ=35)          gCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCaa                                                                                                                               >  2:641066/1‑141 (MQ=39)           cATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTTTTTTTTTGTTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAATATCCAAc                                                                                                                              >  2:723622/1‑141 (MQ=11)           cATCTCCTCGTGTTGATTATTTTGGTTGACTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAc                                                                                                                              <  2:737442/141‑1 (MQ=255)            aTCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAcc                                                                                                                             <  1:926195/141‑1 (MQ=40)            aTCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAcc                                                                                                                             <  2:399014/141‑1 (MQ=40)                      gtTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAg                                                                                                                   <  1:587328/141‑1 (MQ=255)                          attattTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTa                                                                                                               <  1:84364/141‑1 (MQ=255)                           ttattTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAAATACAATGTTTTTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTtagactataa                                                                                                              <  1:350574/141‑9 (MQ=14)                             attTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTtagaccataaca                                                                                                            <  1:970615/141‑11 (MQ=255)                                  ggttggCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGt                                                                                                       >  1:646339/1‑141 (MQ=255)                                        cTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTTTTTTTTTTTTATAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctc                                                                                                 >  2:265553/1‑141 (MQ=18)                                        cTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTTACAATGGTAGAACCTTTTCTTAACCATACGCCTAGCGGATGGTTTTCTTTTTACAATTAAAGAGCCAACCCTTGTTATAGTCTAACAATGGTTGGctc                                                                                                 >  2:742356/1‑141 (MQ=18)                                        cTGACCAATATTTATTCTAGCACGTAGAGAGGCATTTTTTGTGACAATGGTTGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACACTGGTTGGctc                                                                                                 >  2:80656/1‑141 (MQ=255)                                          gACCAATATTTATTCTTGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcct                                                                                               <  1:265788/141‑1 (MQ=255)                                            ccAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCctct                                                                                             >  1:398006/1‑141 (MQ=255)                                                      ttCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAtgt                                                                                   >  1:222588/1‑141 (MQ=255)                                                       tcgaGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAtgtg                                                                                  >  2:311853/4‑141 (MQ=255)                                                          aGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTa                                                                               <  2:83028/141‑1 (MQ=255)                                                            cACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTaaa                                                                             <  2:536142/141‑1 (MQ=255)                                                                  gagaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTta                                                                       >  2:194748/1‑141 (MQ=255)                                                                  gagaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTta                                                                       <  2:615506/141‑1 (MQ=255)                                                                    gaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTtata                                                                     >  2:755254/1‑141 (MQ=255)                                                                      tGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAgg                                                                   <  1:614658/141‑1 (MQ=255)                                                                       gCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGc                                                                  <  1:750306/141‑1 (MQ=255)                                                                       gCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGc                                                                  <  1:641066/141‑1 (MQ=255)                                                                        cATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCa                                                                 >  1:465113/1‑141 (MQ=255)                                                                               tgtgACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTGACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttat                                                          <  1:741032/141‑1 (MQ=255)                                                                               tgtgACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttat                                                          <  1:926196/141‑1 (MQ=255)                                                                                gtgACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttatt                                                         >  1:35686/1‑141 (MQ=255)                                                                                    cAATGGTAGAACCTTTTCTGAACCATACGCATAGCATATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTacaa                                                     <  2:886130/141‑1 (MQ=255)                                                                                         gTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATg                                                <  2:582874/141‑1 (MQ=255)                                                                                          tAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGt                                               <  1:489487/141‑1 (MQ=255)                                                                                          tAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGt                                               <  1:688826/141‑1 (MQ=255)                                                                                          tAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGt                                               <  1:970455/141‑1 (MQ=255)                                                                                              aCCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATCGGCAATTTTATTACAACAATGTACAt                                           >  2:917452/1‑141 (MQ=255)                                                                                              aCCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAgg                                                                   <  2:78679/117‑1 (MQ=255)                                                                                              aCCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAgg                                                                   >  1:78679/1‑117 (MQ=255)                                                                                              aCCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTAAAAAAAAAAAAAAAAATTTATAGGCAATTTTATTACAACAATGTACAt                                           <  2:360146/141‑1 (MQ=37)                                                                                               ccTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACAtt                                          <  1:998561/141‑1 (MQ=255)                                                                                               ccTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACAtt                                          <  1:737583/141‑1 (MQ=255)                                                                                               ccTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACAtt                                          <  1:47711/141‑1 (MQ=255)                                                                                                 ttttCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTa                                        <  1:380784/141‑1 (MQ=255)                                                                                                  tttCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATTGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTaa                                       <  2:268718/141‑1 (MQ=255)                                                                                                  tttCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTaa                                       <  2:268631/141‑1 (MQ=255)                                                                                                      tGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTg                                   >  1:888983/1‑141 (MQ=255)                                                                                                      tGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTg                                   <  1:329481/141‑1 (MQ=255)                                                                                                        aaCCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATCGGCAATTTTATTACAACAATGTACATTTAAGGTGAc                                 >  1:779324/1‑141 (MQ=255)                                                                                                          ccatacgctatgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCt                               >  1:166139/12‑141 (MQ=255)                                                                                                          ccatacgctatgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCt                               >  1:34032/12‑141 (MQ=255)                                                                                                           catacgctatgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCtt                              >  1:448682/11‑141 (MQ=255)                                                                                                              aCGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCAt                           <  1:335869/141‑1 (MQ=255)                                                                                                                 ctatgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGcc                        >  2:207160/5‑141 (MQ=255)                                                                                                                   atgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCaa                      >  1:844448/3‑141 (MQ=255)                                                                                                                   atgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCaa                      >  1:1008132/3‑141 (MQ=255)                                                                                                                         aTGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGc                >  1:629522/1‑141 (MQ=255)                                                                                                                          tGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCa               <  2:844448/141‑1 (MQ=255)                                                                                                                           ggTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCAt              <  2:103555/141‑1 (MQ=255)                                                                                                                              tttCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCACCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCAc           >  1:517600/1‑141 (MQ=255)                                                                                                                                  tttttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCACTCAt       <  1:805587/141‑1 (MQ=255)                                                                                                                                  tttttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCACTCAt       <  1:483835/141‑1 (MQ=255)                                                                                                                                   ttttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCACTCAtt      <  2:900396/141‑1 (MQ=255)                                                                                                                                   ttttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCACTCAtt      <  2:517600/141‑1 (MQ=255)                                                                                                                                    tttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCACTCAttt     >  2:902133/1‑141 (MQ=255)                                                                                                                                     ttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCACTCATTTa    <  1:873869/141‑1 (MQ=255)                                                                                                                                     ttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCACTCATTTa    <  1:723622/141‑1 (MQ=255)                                                                                                                                      tACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCACTCATTTaa   <  2:976395/141‑1 (MQ=255)                                                                                                                                       aCAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCACTCATTTAAt  <  1:755254/141‑1 (MQ=255)                                                                                                                                          |                                                                                                                                          CATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCACTCATTTAAT  >  CP000730/1918403‑1918677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.