| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 533277 = | 93 (1.160) | 6 (0.080) | 6/250 | 10.3 | 6.4% | intergenic (+2848/‑2877) | veg/rplY | hypothetical protein/ribosomal protein L25 |
| ? | CP000730 | = 533297 | 88 (1.180) | intergenic (+2868/‑2857) | veg/rplY | hypothetical protein/ribosomal protein L25 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTTTTCTTACTTCAAAAATACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/533425‑533277‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaaaaacATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGTTTTTATC < CP000730/533297‑533158 TTTTTCTTACTTAAAAAATACGATCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACT < 2:753511/141‑1 TTTTCTTACTTCAAAAATACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTA > 1:887276/1‑141 TTCTTACTTCAAAAATACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAA < 1:968663/141‑1 TTCTTACTTCAAAAATACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAA > 2:422303/1‑141 TACTTCAAAAATACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAA > 2:639881/1‑141 TACTTCAAAAATACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAA > 1:757879/1‑141 ACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAA < 1:693148/124‑1 ACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAA > 2:693148/1‑124 ACGAGCATCATTCAAACGCAATTTTTATCAGCAATAAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAACATTAATACAAA < 2:403108/141‑1 ATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATC > 2:736780/1‑141 TTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGAC > 1:846200/1‑133 TTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGAC < 2:846200/133‑1 ATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATTATATCATCTTTTTGTAA > 1:783339/1‑141 AATACAAACTAAAAAAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCT > 2:909668/1‑141 AAAAAAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGT > 1:281612/1‑141 AAAAAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGTT > 2:995852/1‑141 AAAAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGTTT > 2:220021/1‑141 AAAACATTAATACAAACTAAAAATACTGCCGACAACGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGTTTT > 2:785708/1‑141 AAACATTAATACAAACTAAAAAAACTGCCGTCAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGTTTTT < 1:782852/141‑1 AAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTA < 1:93722/84‑1 AAACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTA > 2:93722/1‑84 AACATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGTTTTTA > 2:105839/1‑141 CATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGTTTTTATC < 2:655653/141‑1 TTTTTCTTACTTCAAAAATACGAGCATCATTCAAACGCAATTTTTATCAGCAATGAATCAATAATTTTCATATCATCATAATCTGTTAACGTATATATTTATTAGCCTTTCATTAAAAATAAAAAAACATTAATACAAACTAAAAAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/533425‑533277‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaaaaacATTAATACAAACTAAAAAAACTGCCGACAAAGCTTTATGCTTTATCGACAGTATCAAATCAACTTATTGCAAATGTATTACATCGCTAAATATAAAATTGATTAAGCTTCTTCTGAATCTTCTGATGTAGCGTTTTTATC < CP000730/533297‑533158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |