| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1287796 = | 16 (0.460) | 3 (0.090) | 3/246 | 5.0 | 12.0% | intergenic (+44/‑246) | dnaE1/rimP | DNA‑directed DNA polymerase III alpha subunit/hypothetical protein |
| ? | CP000730 | 1287846 = | 29 (0.910) | intergenic (+94/‑196) | dnaE1/rimP | DNA‑directed DNA polymerase III alpha subunit/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGCTTGAAACAAATGACTTCACTATTAATCAGAGATTCTTGTAAAAGTTTGTTCCTTTATTTCACCATTACATTTGAATAGACTCGTAAGACATTGAAAAGAAATACGGGCATAATTTTGTGTCCAGCAACAATTTTGTATTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1287943‑1287796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatttctttTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCATAAACTTATGCTATAATTAAGTTGCTTAAAAATTAGTGAACTC > CP000730/1287846‑1287985 ATGCTTGAAACAAATGACTTCACTATTAATCAGAGATTCTTGTAAAAGTATGTTCCTTTATTTCACCATTACATTTGAATAGACTCGTAAGACATTGAAAAGAAATACGGGCATAATTTTGTGTCCAGCACCAATTTTGTA > 2:60021/1‑141 GAAACAAATGACTTCACTATTAATCAGAGATTCTTGTAAAAGTTTGTTCCTTTATTTCACCATTACATTTGAATAGACTCGTAAGACATTGAAAAGAAATACGGGCATAATTTTGTGTCCAGCAACAATTTTGTATTTCTT > 1:100930/1‑141 GAAACAAATGACTTCACTATTAATCAGAGATTCTTGTAAAAGTTTGTTCCTTTATTTCACCATTACATTTGAATAGACTCGTAAGACATTGAAAAGAAATACGGGCATAATTTTGTGTCCAGCAACAATTTTGTATTTCTT < 1:426790/141‑1 GAAACAAATGACTTCACTATTAATCAGAGATTCTTGTAAAAGTTTGTTCCTTTATTTCACCATTACATTTGAATAGACTCGTAAGACATTGAAAAGAAATACGGGCATAATTTTGTGTCCAGCAACAATTTTGTATGTCTT > 2:386387/1‑141 AGAAATACGGGCATAATTTTGTGTCCAGCAACAATTTTGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCA > 1:221620/1‑141 AAATACGGGCATAATTTTGTGTCCAGCAACAATTTTGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAAC < 1:155011/97‑1 AAATACGGGCATAATTTTGTGTCCAGCAACAATTTTGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAAC > 2:155011/1‑97 TTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCATA > 1:107615/1‑102 TTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCATA < 2:107615/102‑1 TTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCATAAACTTATGCTATAATTAAGTTGCTTAAAAATTAGTGAACTC > 1:237375/1‑141 ATGCTTGAAACAAATGACTTCACTATTAATCAGAGATTCTTGTAAAAGTTTGTTCCTTTATTTCACCATTACATTTGAATAGACTCGTAAGACATTGAAAAGAAATACGGGCATAATTTTGTGTCCAGCAACAATTTTGTATTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1287943‑1287796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatttctttTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCATTTGTTTCAAGCATAAACTTATGCTATAATTAAGTTGCTTAAAAATTAGTGAACTC > CP000730/1287846‑1287985 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |