New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1287796 =	16 (0.460)	3 (0.090)	3/246	5.0	12.0%	intergenic (+44/‑246)	dnaE1/rimP	DNA‑directed DNA polymerase III alpha subunit/hypothetical protein
	?	CP000730	1287846 =	29 (0.910)					intergenic (+94/‑196)	dnaE1/rimP	DNA‑directed DNA polymerase III alpha subunit/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTCAGAAAATTATTGAGTATTTAGATGAGTTAGGCTCATTACCGAATTTACCAGATAAAGCTCAACTTTCGATATTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCAT  >  CP000730/1287667‑1287930                                                                                                                                  |                                                                                                                                       ctcAGAAAATTATTGAGTATTTAGATGAGTTAGGCTCATTACCGAATTTACCAGATAAAGCTCAACTTTCGATATTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACaa                                                                                                                             >  1:167013/1‑141 (MQ=255)        aaTTATTGAGTATTTAGATGAGTTAGGCTCATTACCGAATTTACCAGATAAAGCTCAACTTTCGATATTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAAttgtt                                                                                                                      >  1:118858/1‑141 (MQ=255)                  tATTTAGATGAGTTAGGCTCATTACCGAATTTACCAGATAAAGCTCAACTTTCGATATTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTTAAAGAAATACAAAATTGGTGCTGGacata                                                                                                            <  2:203913/141‑3 (MQ=255)                                     cATTACCGAATTTACCAGATAAAGCTCAACTTTCGATATTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCt                                                                                         <  1:168473/141‑1 (MQ=255)                                         aCCGAATTTACCAGATAAAGCTCAACTTTCGATATTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTc                                                                                     >  1:18568/1‑141 (MQ=255)                                                               cAACTTTCGATATTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCtt                                                                             <  2:91893/127‑1 (MQ=255)                                                               cAACTTTCGATATTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCtt                                                                             >  1:91893/1‑127 (MQ=255)                                                                     tCGATATTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTaa                                                         >  1:315535/1‑141 (MQ=255)                                                                          atTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTg                                                    <  2:423231/141‑1 (MQ=255)                                                                                    tAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGa                                          <  2:105976/141‑1 (MQ=255)                                                                                          gAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAAc                                    <  1:349389/141‑1 (MQ=255)                                                                                               aatCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTa                               >  1:166446/1‑141 (MQ=255)                                                                                                 tCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACa                             <  2:424370/141‑1 (MQ=255)                                                                                                           tatttaATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTg                   >  2:275011/1‑141 (MQ=255)                                                                                                                      tATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGa        >  2:123497/1‑141 (MQ=255)                                                                                                                            gtagtaAAAGAAATACAAAATTGTTGCTTGACACAAAATTATGCTCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACACACTTTTACAAGAATCTCTGATTAATAGTGAAGTCAt  <  2:225537/141‑1 (MQ=255)                                                                                                                                  |                                                                                                                                       CTCAGAAAATTATTGAGTATTTAGATGAGTTAGGCTCATTACCGAATTTACCAGATAAAGCTCAACTTTCGATATTTGATATGTAAAATGAAATAATCAAGGTATTTATTTAATGCGTATGGCGTAGTCAAAGAAATACAAAATTGTTGCTGGACACAAAATTATGCCCGTATTTCTTTTCAATGTCTTACGAGTCTATTCAAATGTAATGGTGAAATAAAGGAACAAACTTTTACAAGAATCTCTGATTAATAGTGAAGTCAT  >  CP000730/1287667‑1287930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.