New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1676788	77 (0.870)	5 (0.060)	5/254	NT	6.2%	intergenic (‑894/‑75)	USA300HOU_1565/glyS	hypothetical protein/glycine‑‑tRNA ligase
	?	CP000730	= 1676835	75 (0.860)					intergenic (‑941/‑28)	USA300HOU_1565/glyS	hypothetical protein/glycine‑‑tRNA ligase

AAGGATAGTGTAAGCTTAACAATAAGATTGGCGCAACGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1676648‑1676788 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgCCCCATGGAAAATAACAGCATAGTAAATATGCTTTACTTCCATGGGACGAGTTAATATTTTAAATTGTATATAATACAAAATAAGTTACGTATTTAACCCGCGGTTCCACCCAAATTAGTGTAGTCACTCGCTTTTATT  <  CP000730/1676835‑1676697                                                                                                                                                                                                                                                                                          AAGGATAGTGTAAGCTTAACAATAAGATTGGCGCAACGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCG                                                                                                                                             <  1:614967/141‑1                                     CGAATNATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAAATAACAGCATAGTAAATATGCTTTA                                                                                                         <  1:72102/141‑1                                      GAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAAATAACAGCATAGTAAATATGCTTTAC                                                                                                        <  1:802775/141‑1                                       AATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGTGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAAATAACAGCATAGTAAATATGCTTTACT                                                                                                       <  2:329074/141‑1                                        ATCATTTTAAAATAAAAGCGGTTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGCCCCATGGAAAATAACAGCATAGTAAATATGCTTTACTT                                                                                                      <  2:927654/141‑1                                                               GACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGCCCCATGGAAAATAACAGCATAGTAAATATGCTTTACTTCCATGGGACGAGTTAATATTTTA                                                                               <  1:657756/141‑1                                                                                                                                            CGCCCCATGGAAAATAACAGCATAGTAAATATGCTTTACTTCCATGGGACGAGTTAATATTTTAAATTGTATATAATACAAAATAAGTTACGTATTTAACCCGCGGTTCCACCCAAATTAGTGTAGTCACTCGCTTTTATT  >  2:28359/1‑141                                                                                                                                                                                                                                                                                          AAGGATAGTGTAAGCTTAACAATAAGATTGGCGCAACGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1676648‑1676788 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgCCCCATGGAAAATAACAGCATAGTAAATATGCTTTACTTCCATGGGACGAGTTAATATTTTAAATTGTATATAATACAAAATAAGTTACGTATTTAACCCGCGGTTCCACCCAAATTAGTGTAGTCACTCGCTTTTATT  <  CP000730/1676835‑1676697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.