New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1676788	77 (0.870)	5 (0.060)	5/254	NT	6.2%	intergenic (‑894/‑75)	USA300HOU_1565/glyS	hypothetical protein/glycine‑‑tRNA ligase
	?	CP000730	= 1676835	75 (0.860)					intergenic (‑941/‑28)	USA300HOU_1565/glyS	hypothetical protein/glycine‑‑tRNA ligase

AAGGATAGTGTAAGCTTAACAATAAGATTGGCGCAACGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCTGGTAG  >  CP000730/1676648‑1676927                                                                                                                                             |                                                                                                                                            aaGGATAGTGTAAGCTTAACAATAAGATTGGCGCAACGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCG                                                                                                                                             <  1:614967‑M1/141‑1 (MQ=255)  aGGATAGTGTAAGCTTAACAATAAGATTGGCGCNACGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGt                                                                                                                                            >  1:28359/1‑141 (MQ=255)  aGGATAGTGTAAGCTTAACAATAAGATTGGCGCAACGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGt                                                                                                                                            >  2:661683/1‑141 (MQ=255)  aGGATAGTGTAAGCTTAACAATAAGATTGGCGCAACGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGt                                                                                                                                            >  1:236355/1‑141 (MQ=255)  aGGATAGTGTAAGCTTAACAATAAGATTGGCGCAACGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGt                                                                                                                                            >  2:233888/1‑141 (MQ=255)       aGTGTAAGCTTAACAATAAGATTGGCGCAACGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAAGACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCAt                                                                                                                                       <  2:183725/141‑1 (MQ=255)              acTTAACAATAAGATTGGCGCAACAAATCATTTTACAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTa                                                                                                                                <  2:80442/140‑1 (MQ=255)               cTTAACAATAAGATTGGCGCAACGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATAGGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTaa                                                                                                                               <  1:47315/141‑1 (MQ=255)                    cAATAAGATTGGCGCAACGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCat                                                                                                                          >  2:802400/1‑141 (MQ=255)                    cAATAAGATTGGCGCAACGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTAGTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCat                                                                                                                          >  2:771729/1‑141 (MQ=255)                       tAAGATTGGCGCAACGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTaaatatgctt                                                                                                                       <  2:156765/141‑8 (MQ=255)                             tGGCGCAACGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTAt                                                                                                                 >  1:106511/1‑141 (MQ=255)                               gcgcAACGAATCATTTTAAAATAAAAGCGAGTGTCGACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGc                                                                                                               >  2:864615/1‑141 (MQ=255)                                  cAACGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGt                                                                                                            <  2:192946/141‑1 (MQ=255)                                    aCGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTa                                                                                                          >  1:611267/1‑141 (MQ=255)                                     cGAATNATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGtcccatggaaaataacagcatagtaaatatgcttta                                                                                                         <  1:72102‑M1/141‑37 (MQ=255)                                      gcatgaattcaaaataaaaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTAtt                                                                                                        <  2:314275/131‑1 (MQ=255)                                      gAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGtcccatggaaaataacagcatagtaaatatgctttac                                                                                                        <  1:802775‑M1/141‑38 (MQ=255)                                       aaTCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGTGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGtcccatggaaaataacagcatagtaaatatgctttact                                                                                                       <  2:329074‑M1/141‑39 (MQ=255)                                        aTCATTTTAAAATAAAAGCGGTTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttactt                                                                                                      <  2:927654‑M1/141‑40 (MQ=255)                                          cATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTcc                                                                                                    >  2:808692/1‑141 (MQ=255)                                          cATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTcc                                                                                                    >  1:321055/1‑141 (MQ=255)                                              ttAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATgg                                                                                                <  2:986670/141‑1 (MQ=255)                                                aaaataaaaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTGATTTTGTATTGTATACAGTTTAAATTTTTAACTCGTCCGATGGAAGTAAAGCATAGTTACGATGCTGTTATTTTCCATgggg                                                                                              >  1:918686/1‑141 (MQ=255)                                                  aaTAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcg                                                                                            >  2:28359‑M2/1‑139 (MQ=255)                                                    taaaaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGtt                                                                                          <  2:341851/141‑1 (MQ=255)                                                    taaaaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGtt                                                                                          >  2:364671/1‑141 (MQ=255)                                                     aaaaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGttt                                                                                         <  1:962287/141‑1 (MQ=255)                                                      aaaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGtttt                                                                                        <  1:364671/141‑1 (MQ=255)                                                       aaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTc                                                                                       <  1:834852/141‑1 (MQ=255)                                                       aaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTc                                                                                       <  2:488277/141‑1 (MQ=255)                                                        aGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCa                                                                                      <  1:67838/141‑1 (MQ=255)                                                         gCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCACATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCAt                                                                                     <  1:783180/141‑1 (MQ=255)                                                           gAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGt                                                                                   <  1:151395/141‑1 (MQ=255)                                                            aGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTa                                                                                  <  1:924900/141‑1 (MQ=255)                                                            aGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTa                                                                                  <  2:665086/141‑1 (MQ=255)                                                             gTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTAt                                                                                 >  1:466810/1‑141 (MQ=255)                                                             gTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTAt                                                                                 >  2:22666/1‑141 (MQ=255)                                                             gTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTAt                                                                                 >  2:689385/1‑141 (MQ=255)                                                              tGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACACTTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATg                                                                                >  1:476194/1‑141 (MQ=255)                                                               gACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttacttccatgggacgagttaatatttta                                                                               <  1:657756‑M1/141‑63 (MQ=255)                                                                   acacTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATgaggag                                                                           >  2:569184/1‑141 (MQ=255)                                                                    cacTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGgaga                                                                          <  2:635279/141‑1 (MQ=255)                                                                     acTAATTTGGGTGGAACCTCGGGTTAAAAACTTAACTTATGTTTTATTTTTTACAATTTAAAATATTTACTCTTCTCATTGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGagag                                                                         <  1:158165/141‑1 (MQ=255)                                                                     acTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGagag                                                                         <  1:720419/141‑1 (MQ=255)                                                                     acTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGagag                                                                         <  2:330710/141‑1 (MQ=255)                                                                       tAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGt                                                                       >  2:912774/1‑141 (MQ=255)                                                                         aTTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTaa                                                                     >  1:128427/1‑141 (MQ=255)                                                                          tttGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGaaaa                                                                    <  2:192801/141‑2 (MQ=255)                                                                             gggTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGGGAGGTAATTAt                                                                 >  2:2931/1‑141 (MQ=255)                                                                              ggTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATg                                                                >  2:978013/1‑141 (MQ=255)                                                                                tttaaCCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGc                                                              <  1:324800/138‑1 (MQ=255)                                                                                tGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGc                                                              >  1:428270/1‑141 (MQ=255)                                                                                tGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGc                                                              >  2:168826/1‑141 (MQ=255)                                                                                 ggAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCa                                                             <  1:1015826/141‑1 (MQ=255)                                                                                    aCCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCaaaa                                                          >  2:251351/1‑141 (MQ=255)                                                                                      cgcgGGTTAAATACGTAACTTATTTTGTATTATCTACCATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGa                                                        >  1:846144/1‑141 (MQ=255)                                                                                        cgGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGata                                                      >  1:479138/1‑141 (MQ=255)                                                                                         gggTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGatat                                                     >  1:939656/1‑141 (MQ=255)                                                                                          ggTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATg                                                    <  1:790244/141‑1 (MQ=255)                                                                                             tAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAACGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGAt                                                 <  1:215409/141‑1 (MQ=255)                                                                                             tAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGAt                                                 <  1:76922/141‑1 (MQ=255)                                                                                              aaaTACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGTGGCAATTATGGCAAAAGATATGGATa                                                >  2:860054/1‑141 (MQ=255)                                                                                              aaaTACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATa                                                >  1:113447/1‑141 (MQ=255)                                                                                              aaaTACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATa                                                <  1:394341/141‑1 (MQ=255)                                                                                                aTACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACa                                              <  1:966638/141‑1 (MQ=255)                                                                                                   cGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAAtt                                           <  1:182238/141‑1 (MQ=255)                                                                                                     tAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGt                                         >  2:518682/1‑141 (MQ=255)                                                                                                      aaCTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGtt                                        >  1:588441/1‑141 (MQ=255)                                                                                                         ttATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCGTATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGtttta                                     >  1:722914/1‑139 (MQ=255)                                                                                                                gTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCaa                              <  1:589093/141‑1 (MQ=255)                                                                                                                gTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCaa                              <  2:1009963/141‑1 (MQ=255)                                                                                                                gTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCaa                              <  2:736521/141‑1 (MQ=255)                                                                                                                 tattatATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCaaa                             >  1:324122/1‑141 (MQ=255)                                                                                                                     atatcCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAacac                         <  1:1042190/141‑1 (MQ=255)                                                                                                                     atataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATGTTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAacac                         <  2:1027366/141‑1 (MQ=255)                                                                                                                     atataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAacac                         >  1:698668/1‑141 (MQ=255)                                                                                                                     atataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAacac                         <  2:202308/141‑1 (MQ=255)                                                                                                                       ataCAATTTAAAAGATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCANAAGNTATGGATACAATTGTTTCATTAGCAAAACACag                       <  1:864615/141‑1 (MQ=255)                                                                                                                          cAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGCATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGATTCATTAGCAAAACACAGAgg                    >  1:582897/1‑141 (MQ=255)                                                                                                                               tAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcgagttaatattttaaattgtatataatacaaaataagttacgtatttaacccgcggttccacccaaattagtgtagtc               <  1:657756‑M2/141‑80 (MQ=255)                                                                                                                               tAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTtg               <  2:611267/141‑1 (MQ=255)                                                                                                                               tAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTCTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTtg               <  1:809846/141‑1 (MQ=255)                                                                                                                                 aaaTATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAAcacaaaacctctgtg             <  1:675741/141‑12 (MQ=255)                                                                                                                                  aaTATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTgtgt            >  2:982720/1‑141 (MQ=255)                                                                                                                                  aaTATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTgtgt            <  2:588441/141‑1 (MQ=255)                                                                                                                                  aaTATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTgtgt            <  2:48699/141‑1 (MQ=255)                                                                                                                                  aaTATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTgtgt            >  1:601313/1‑141 (MQ=255)                                                                                                                                  aaTATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGACAGGCCTGAGCGATAATCAAAACACAGAGGTTTTgtgt            <  2:48529/141‑1 (MQ=255)                                                                                                                                           tCGCCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCTGGTa   <  1:697989/141‑1 (MQ=255)                                                                                                                                            cGccccatggaaaataacagcatagtaaatatgctttacttccatgggacgagttaatattttaaattgtatataatacaaaataagttacgtatttaacccgcggttccacccaaattagtgtagtcactcgcttttatt  >  2:28359‑M1/1‑2 (MQ=255)                                                                                                                                            cGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCTGGTAg  <  1:21285/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                            AAGGATAGTGTAAGCTTAACAATAAGATTGGCGCAACGAATCATTTTAAAATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCTGGTAG  >  CP000730/1676648‑1676927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.