New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2252658 =94 (1.060)5 (0.060) 4/246 NT 5.5% intergenic (+94/+58) luxS/USA300HOU_2124 S‑ribosylhomocysteine lyase/hypothetical membrane protein
?CP000730 2252704 = 82 (0.970)intergenic (+140/+12) luxS/USA300HOU_2124 S‑ribosylhomocysteine lyase/hypothetical membrane protein

TTTAGGAGATAAACAATTGCCAACATGGCAACTATATTTAAGGTTACCTATGCAGTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2252803‑2252658
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatttATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTATCTCCTAAAGGTAACTTTTTAACTGCCATATAGAT  >  CP000730/2252704‑2252829
                                                                                                                                                                                                                                                                                
TTTAGGAGATAAACAATTGCCAACATGGCAACTATATTTAAGGTTACCTATGCAGTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTC                                                                                                                                     >  2:174318/1‑141
 TTAGGAGATAAACAATTGCCAACATGGCAACTATATTTAAGGTTACCTATGCAGTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCG                                                                                                                                    <  1:940875/141‑1
 TTAGGAGATAAACAATTGCCAACATGGCAACTATATTTAAGGTTACCTATGCAGTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCG                                                                                                                                    <  1:819440/141‑1
    GGAGATAAACAATTGCCAACATGGCAACTATATTTAAGGTTACCTATGCAGTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATT                                                                                                                                 >  2:784914/1‑141
                                                                                                      ATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTATCTCCT                               >  2:496441/1‑141
                                                                                                      ATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTATCTCCT                               >  2:496667/1‑141
                                                                                                       TCGGACAAATGTTAAAGATTCTACTTTTTCATTTGTTCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTATCTCCTA                              >  1:825099/1‑141
                                                                                                        CGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTATCTCCTAA                             >  1:127429/1‑141
                                                                                                                                   TCATTTGTTCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTATCTCCTAAAGGTAACTTTTTAACTGCCATATAGAT  >  1:92016/1‑141
                                                                                                                                                                                                                                                                                
TTTAGGAGATAAACAATTGCCAACATGGCAACTATATTTAAGGTTACCTATGCAGTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2252803‑2252658
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatttATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTATCTCCTAAAGGTAACTTTTTAACTGCCATATAGAT  >  CP000730/2252704‑2252829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.