| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1114106 | 67 (1.010) | 3 (0.050) | 3/232 | 8.4 | 5.1% | intergenic (+35/‑4) | USA300HOU_1045/USA300HOU_1046 | hypothetical membrane protein/hypothetical protein |
| ? | CP000730 | = 1114131 | 54 (0.930) | coding (22/105 nt) | USA300HOU_1046 | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAAGTTTGATGGCTCTTAATTTAATTGCAATTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1113950‑1114106‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccattaaaatgttGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCTTATGTGTTGTTTCTTTTGATTCTTTTTTAGAAATCAACATAATCATCAC < CP000730/1114131‑1113997 TAAGTTTGATGGCTCTTAATTTAATTGCAATTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAA > 2:374641/1‑141 TTTGATGGCTCTTAATTTAATTGCAATTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAAC < 2:439040/141‑1 TTTGATGGCTCTTAATTTAATTGCAATTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAAC < 1:564635/141‑1 GATGGCTCTTAATTTAATTGCAATTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCAT > 1:449106/1‑141 GCTCTTAATTTAATTGCAATTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAA < 1:590158/141‑1 TCTTAATTTAATTGCAATTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAAT > 1:264499/1‑141 TCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACA < 2:592018/141‑1 TGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAA < 2:762760/141‑1 ATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATG < 1:390203/141‑1 TAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCTTATGTGTTGTTTCTTTTGATTCTTTTTTAGAAATCAACATAATCAT < 2:299985/141‑1 TAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCTTATGTGTTGTTTCTTTTGATTCTTTTTTAGAAATCAACATAATCAT < 2:38996/141‑1 AATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCTTATGTGTTGTTTCTTTTGATTCTTTTTTAGAAATCAACATAATCATCAC < 1:318491/141‑1 AATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCTTATGTGTTGTTTCTTTTGATTCTTTTTTAGAAATCAACATAATCATCAC < 1:177986/141‑1 TAAGTTTGATGGCTCTTAATTTAATTGCAATTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1113950‑1114106‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccattaaaatgttGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCTTATGTGTTGTTTCTTTTGATTCTTTTTTAGAAATCAACATAATCATCAC < CP000730/1114131‑1113997 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |