| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1713218 | 57 (0.860) | 4 (0.060) | 4/248 | 8.2 | 6.7% | coding (209/753 nt) | ycsF | possible lactam utilization protein |
| ? | CP000730 | = 1713265 | 58 (0.930) | coding (162/753 nt) | ycsF | possible lactam utilization protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACCCATCTGATACAATGCACCATGCGGTTTAACATGATTAATTTTAACTTGATGAATGCGACAAAACCCTTGTAATGCACCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1713073‑1713218‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccaaagcACATAATGTTGCAGTAGGTGCACATCCTGGTTTACCTGATTTGAAAGGCTTTGGCAGACGAAATATAGATATCTCTAACGACGAGATTTATAATTTGATGATTTATCAATTAGGTGCATTACAAGGGTTTTGTCGCA < CP000730/1713265‑1713129 ACCCATCTGATACAATGCACCATGCGGTTTAACATGATTAATTTTAACTTGATGAATGCGACAAAACCCTTGTAATGCACCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCC > 2:733665/1‑141ACCCATCTGATACAATGCACCATGCGGTTTAACATGATTAATTTTAACTTGATGAATGCGACAAAACCCTTGTAATGCACCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCC < 2:346791/141‑1 CCCATGTGATACAATGCACCATGCGGATTAACATGATTAATTTTAACTTGATGAATGCGACAAAACCCTTGTAATGCTCCTAATTGATAAATCATCAAATTATAAATGTCGTCGTTAGAGATATCTATATTTCGTCTGCCg > 2:661854/1‑140 TGCGGTTTAACATGATTAATTTTAACTTGATGAATGCGACAAAACCCTTGTAATGCACCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCACATAATGTTGCAGTAG > 1:651817/1‑141 TTGATGAATGCGACAAAACCCTTGTAATGCACCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCACATAATGTTGCAGTAGGTGCACATCCTGGTTTACCTGATTTG < 2:651817/141‑1 GATGAATGCGACAAAACCCTTGTAATGCACCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCACATAATGTTGCAGTAGGTGCACATCCTGGTTTACCTGATTTGAA < 1:764581/141‑1 TGAATGCGACAAAACCCTTGTAATGCACCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCACATAATGTTGCAGTAGGTGCACATCCTGGTTTACCTGATTTGAAAG < 1:427705/141‑1 CCAAAGCACATAATGTTGCAGTAGGTGCACATCCTGGTTTACCTGATTTGAAAGGCTTTGGCAGACGAAATATAGATATCTCTAACGACGAGATTTATAATTTGATGATTTATCAATTAGGTGCATTACAAGGGTTTTGTC > 1:271600/1‑141 AAAGCACATAATGTTGCAGTAGGTGGACATCCTGGTTTACCTGATTTGAAAGGCTTTGGCAGACGAAATATAGATATCTCTAACGACGAGATTTATAATTTGANGATNTATCNATTAGGTGCANTACAAGGGTTTTGTCGC < 1:507042/141‑1 AAGCACATAATGTTGCAGTAGGTGCACATCCTGGTTTACCTGATTTGAAAGGCTTTGGCAGACGAAATATAGATATCTCTAACGACGAGATTTATAATTTGATGATTTATCAATTAGGTGCATTACAAGGGTTTTGTCGCA > 2:130232/1‑141 AAGCACATAATGTTGCAGTAGGTGCACATCCTGGTTTACCTGATTTGAAAGGCTTTGGCAGACGAAATATAGATATCTCTAACGACGAGATTTATAATTTGATGATTTATCAATTAGGTGCATTACAAGGGTTTTGTCGCA > 1:98499/1‑141 ACCCATCTGATACAATGCACCATGCGGTTTAACATGATTAATTTTAACTTGATGAATGCGACAAAACCCTTGTAATGCACCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1713073‑1713218‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccaaagcACATAATGTTGCAGTAGGTGCACATCCTGGTTTACCTGATTTGAAAGGCTTTGGCAGACGAAATATAGATATCTCTAACGACGAGATTTATAATTTGATGATTTATCAATTAGGTGCATTACAAGGGTTTTGTCGCA < CP000730/1713265‑1713129 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |