New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1713218	57 (0.860)	4 (0.060)	4/248	8.2	6.7%	coding (209/753 nt)	ycsF	possible lactam utilization protein
	?	CP000730	= 1713265	58 (0.930)					coding (162/753 nt)	ycsF	possible lactam utilization protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCGACAAAACCCTTGTAATGCACCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCACCACCAAAGGAATAATTTCCAAATGCTTCGCCTAAATC  >  CP000730/1713129‑1713405                                                                                                                                         |                                                                                                                                             tGCGACAAAACCCTTGTAATGCACCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCtt                                                                                                                                          <  1:98499/141‑1 (MQ=255) tGCGACAAAACCCTTGTAATGCACCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCtt                                                                                                                                          <  2:130232/141‑1 (MQ=255)  gCGACAAAACCCTTGTANTGCACCTAATNGATANATCNTCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTCCACCTACTGCAACATTATGTGCttt                                                                                                                                         >  1:507042/1‑141 (MQ=255)    gACAAAACCCTTGTAATGCACCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTgg                                                                                                                                       <  1:271600/141‑1 (MQ=255)            ccTTGTAATGCACCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGtttt                                                                                                                               <  1:560793/141‑1 (MQ=255)                 tAATGCACCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGt                                                                                                                          <  2:422838/141‑1 (MQ=255)                      cACCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTttcat                                                                                                                     >  1:463256/1‑141 (MQ=255)                       aCCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTttcatt                                                                                                                    >  2:199586/1‑141 (MQ=255)                       aCCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTttcatt                                                                                                                    >  1:357327/1‑141 (MQ=255)                           aaTTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTcattcatt                                                                                                                <  1:59930/141‑1 (MQ=255)                           aaTTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTcattcatt                                                                                                                >  1:665812/1‑141 (MQ=255)                              tGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACa                                                                                                             <  1:733665/141‑1 (MQ=255)                               gATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACAt                                                                                                            <  1:351851/141‑1 (MQ=255)                               gATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACAt                                                                                                            >  1:400722/1‑141 (MQ=255)                                aTAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACAtt                                                                                                           >  2:750361/1‑141 (MQ=255)                                     tcatcaAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTtcat                                                                                                      >  2:746983/1‑141 (MQ=255)                                     tcatcaAATTATAAATCTCGTCGTAAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTtcat                                                                                                      <  1:456215/141‑1 (MQ=255)                                          aaaTTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCa                                                                                                 >  2:241026/1‑141 (MQ=255)                                           aaTTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAg                                                                                                <  1:115685/141‑1 (MQ=255)                                            aTTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGc                                                                                               >  1:707187/1‑141 (MQ=255)                                            aTTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGc                                                                                               >  2:376333/1‑141 (MQ=255)                                              tataAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCgc                                                                                             <  1:750361/141‑2 (MQ=255)                                                taAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGa                                                                                           >  1:293498/1‑141 (MQ=255)                                                       cgtcgtTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACcac                                                                                    <  1:142265/141‑1 (MQ=255)                                                                agaTATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACAt                                                                           >  1:48466/1‑141 (MQ=255)                                                                    atCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGc                                                                       >  2:383224/1‑141 (MQ=255)                                                                     tCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCa                                                                      >  2:206104/1‑141 (MQ=255)                                                                       tataTTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACt                                                                    <  1:66386/141‑1 (MQ=255)                                                                        atatTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACtt                                                                   <  2:269988/141‑1 (MQ=255)                                                                        atatTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACtt                                                                   <  1:188262/141‑1 (MQ=255)                                                                               gTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTa                                                            >  1:725452/1‑141 (MQ=255)                                                                                tCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTaa                                                           >  1:178724/1‑141 (MQ=255)                                                                                    ccAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGa                                                       <  2:639540/141‑1 (MQ=255)                                                                                      aaaGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGaat                                                     <  1:89999/141‑1 (MQ=255)                                                                                          ccTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACAtttt                                                                                                         >  1:676051/1‑85 (MQ=255)                                                                                          ccTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACAtttt                                                                                                         <  2:676051/85‑1 (MQ=255)                                                                                             ttCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTtga                                              >  1:144598/1‑141 (MQ=255)                                                                                               cAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTtgatg                                            >  1:366768/1‑141 (MQ=255)                                                                                                   tCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATca                                        <  1:249394/141‑1 (MQ=255)                                                                                                         aaaCCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCAccacca                                  <  1:193798/141‑1 (MQ=255)                                                                                                         aaaCCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCAccacca                                  >  1:739728/1‑141 (MQ=255)                                                                                                          aaCCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATcaccaactt                                 >  2:675709/1‑137 (MQ=255)                                                                                                           aCCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTGACGGAATAAGTTGATGATCACCACCaaa                                >  2:153478/1‑141 (MQ=255)                                                                                                                gATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTAACTTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCACCACCAAAGGaat                           <  1:611105/141‑1 (MQ=255)                                                                                                                 aTGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCACCACCAAAGGaata                          <  2:293498/141‑1 (MQ=255)                                                                                                                 aTGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCACCACCAAAGGaata                          <  2:739728/141‑1 (MQ=255)                                                                                                                     gCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGGGTCATACATTACATTTTCATGACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCAACACCAAAGGAATAAttt                      >  2:513686/1‑141 (MQ=255)                                                                                                                       aCCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCACCACCAAAGGAATAATTTcc                    <  2:51840/141‑1 (MQ=255)                                                                                                                          tACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCACCACCAAAGGAATAATTTCCaaa                 <  1:661854/141‑1 (MQ=255)                                                                                                                               cAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACCTTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCACCACCAAAGGAATAATTTCCAAATGCtt            <  1:117062/141‑1 (MQ=255)                                                                                                                                 aCATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAAtt                                                 <  1:407665/102‑1 (MQ=255)                                                                                                                                 aCATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAAtt                                                 >  2:407665/1‑102 (MQ=255)                                                                                                                                 aCATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCACCACCAAAGGAATAATTTCCAAATGCTTCg          <  1:645991/141‑1 (MQ=255)                                                                                                                                  cATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCACCACCAAAGGAATAATTTCCAAATGCTTCGc         >  2:713947/1‑141 (MQ=255)                                                                                                                                  cATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCACCACCAAAGGAATAATTTCCAAATGCTTCGc         >  1:385755/1‑141 (MQ=255)                                                                                                                                     tATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCACCACCAAAGGAATAATTTCCAAATGCTTCGCCTa      >  1:399291/1‑141 (MQ=255)                                                                                                                                     tATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCACCACCAAAGGAATAATTTCCAAATGCTTCGCCTa      >  1:30913/1‑141 (MQ=255)                                                                                                                                     tATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATAATCACCACTAAAGGAATAATGTCCAAATGCTTCGCCTa      >  2:614427/1‑141 (MQ=255)                                                                                                                                      aTGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCACCACCAAAGGAATAATTTCCAAATGCTTCGCCTaa     >  2:58200/1‑141 (MQ=255)                                                                                                                                        gtgCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTTTTCTCCATTGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCACCACCAAAGGAATAATTTCCAAATGCTTCGCCTAAAt   >  2:721034/1‑141 (MQ=255)                                                                                                                                         tgCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCACCACCAAAGGAATAATTTCCAAATGCTTCGCCTAAATc  <  1:142149/141‑1 (MQ=255)                                                                                                                                         tgCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCACCACCAAAGGAATAATTTCCAAATGCTTCGCCTAAATc  <  2:502849/141‑1 (MQ=255)                                                                                                                                         |                                                                                                                                             TGCGACAAAACCCTTGTAATGCACCTAATTGATAAATCATCAAATTATAAATCTCGTCGTTAGAGATATCTATATTTCGTCTGCCAAAGCCTTTCAAATCAGGTAAACCAGGATGTGCACCTACTGCAACATTATGTGCTTTGGCAAGTTTTACCGTTTCATTCATTACATTTTCATCACCAGCGTGAAAACCACAAGCAACATTCGCACTTGTAATTAACGGAATAATTTGATGATCACCACCAAAGGAATAATTTCCAAATGCTTCGCCTAAATC  >  CP000730/1713129‑1713405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.