New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1963216 =	61 (0.920)	6 (0.090)	5/258	7.8	9.1%	intergenic (‑79/+244)	USA300HOU_1822/hemG	possible hydrolase/protoporphyrinogen oxidase
	?	CP000730	1963268 =	61 (0.940)					intergenic (‑131/+192)	USA300HOU_1822/hemG	possible hydrolase/protoporphyrinogen oxidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATAGATACTTTCAGCGGGAATTATTTTTGTGAAATTGAAGCAGAGACAAAGGTTTAGCTGTTTTTGAATGATATTGAAATGATGACAATACACTTTAATTAGAAATGTCACTTTGCGATATAACATTTCTAATTAAGGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1963357‑1963216 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgtATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTATCTATATTTACACATTACTTCCACCATTATATAACTTAAAAATGACTATATTTCAT  >  CP000730/1963268‑1963407                                                                                                                                                                                                                                                                                            TATAGATACTTTCAGCGGGAATTATTTTTGTGAAATTGAAGCAGAGACAAAGGTTTAGCTGTTTTTGAATGATATTGAAATGATGACAATACACTTTAATTAGAAATGTCACTTTGCGATATAACATTTCTAATTAAGGTG                                                                                                                                               >  2:365426/1‑141                                                                                           ACACTTTAATTAGAAATGTCACTTTGCGATATAACATTTCTAATTAAGGTGTATTGTCATTATTTCATTATCAGTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTATCTAT                                                     >  1:157601/1‑141                                                                                            CACTTTAATTAGAAATGTCACTTTGCGATATAACATTTCTAATTAAGGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTC                                                                                   >  2:704455/1‑110                                                                                            CACTTTAATTAGAAATGTCACTTTGCGATATAACATTTCTAATTAAGGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTC                                                                                   <  1:704455/110‑1                                                                                                TTAATTAGAAATGTCACTTTGCGATATAACATTTCTAATTAAGGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTATCTATATTTA                                                >  1:658918/1‑141                                                                                                TTAATTAGAAATGTCACTTTGCGATATAACATTTCTAATTAAGGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTATCTATATTTA                                                >  1:658892/1‑141                                                                                                      AGAAATGTCACTTTGCGATATAACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTATCTATATTTACACATT                                          >  2:1648/1‑141                                                                                                                                           GTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTATCTATATTTACACATTACTTCCACCATTATATAACTTAAAAATGACTATATTT     >  2:442472/1‑141                                                                                                                                             GTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTATCTATATTTACACATTACTTCCACCATTATATAACTTAAAAATGACTATATTTCA   >  1:606862/1‑141                                                                                                                                              TATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTATCTATATTTACACATTACTTCCACCATTATATAACTTAAAAATGACTATATTTCAT  <  2:481139/141‑1                                                                                                                                                                                                                                                                                            TATAGATACTTTCAGCGGGAATTATTTTTGTGAAATTGAAGCAGAGACAAAGGTTTAGCTGTTTTTGAATGATATTGAAATGATGACAATACACTTTAATTAGAAATGTCACTTTGCGATATAACATTTCTAATTAAGGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1963357‑1963216 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgtATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTATCTATATTTACACATTACTTCCACCATTATATAACTTAAAAATGACTATATTTCAT  >  CP000730/1963268‑1963407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.