New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1963216 =	61 (0.920)	6 (0.090)	5/258	7.8	9.1%	intergenic (‑79/+244)	USA300HOU_1822/hemG	possible hydrolase/protoporphyrinogen oxidase
	?	CP000730	1963268 =	61 (0.940)					intergenic (‑131/+192)	USA300HOU_1822/hemG	possible hydrolase/protoporphyrinogen oxidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CACTGATACCAATGATTTCTACTATTTCCATGCATAGAATGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTATCTA  >  CP000730/1963076‑1963355                                                                                                                                             |                                                                                                                                            cACTGATACCAATGATTTCTACTATTTCCATGCATAGAATGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATaaaaa                                                                                                                                             <  1:525944/141‑1 (MQ=255)   cTGATACCAATGATTTCTACTATTTCCATGCATAGAATGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAaca                                                                                                                                           <  2:720761/141‑1 (MQ=255)   cTGATACCAATGATTTCTACTATTTCCATGCATAGAATGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAaca                                                                                                                                           >  2:390040/1‑141 (MQ=255)    tGATACCAATGATTTCTACTATTTCCATGCATAGAATGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAacac                                                                                                                                          >  1:735457/1‑141 (MQ=255)    tGATACCAATGATTTCTACTATTTCCATGCATAGAATGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAacac                                                                                                                                          >  1:225077/1‑141 (MQ=255)          cAATTAATTGTACTATTTGCATGCATAGAATGTACAATAAGTACATCTGTCATCTCATTCTCTCCTTTCAAATTACTGCTTCTTTTCTATTATTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTGAt                                                                                                                                    <  2:276006/141‑1 (MQ=255)               aTTTCTACTATTTCCATGCATAGAATGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGaa                                                                                                                               >  1:321309/1‑141 (MQ=255)                    tactaTTTCCATGCATAGAATGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGtt                                                                                                                          >  1:528329/1‑141 (MQ=255)                     actaTTTCCATGCATAGAATGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTta                                                                                                                         >  1:540962/1‑141 (MQ=255)                         tttCCATGCATAGAATGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATc                                                                                                                     >  1:550263/1‑141 (MQ=255)                           tCCATGCATAGAATGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGtcactttgc                                                                                                                   >  1:767387/1‑133 (MQ=255)                             cATGCATAGAATGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCaa                                                                                                                 >  1:717695/1‑141 (MQ=255)                               tGCATAGAATGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAg                                                                                                               >  1:490116/1‑141 (MQ=255)                                gCATAGAATGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAAAAAAAAAAAAAAAACACCTTAATTAGAAATGTTATATCGCAAAGt                                                                                                              <  2:548656/141‑1 (MQ=255)                                       aTGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACAttt                                                                                                       <  1:170203/141‑1 (MQ=255)                                       aTGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAANTAGAAATGTTATNTCGCAAAGTGACAttt                                                                                                       <  1:741570/141‑1 (MQ=255)                                        tGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTc                                                                                                      >  1:728401/1‑141 (MQ=255)                                              ataatTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTa                                                                                                <  1:245430/141‑1 (MQ=255)                                                 atTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAg                                                                                             >  2:256491/1‑141 (MQ=255)                                                   tACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAgtg                                                                                           >  1:157836/1‑141 (MQ=255)                                                      aTCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTAt                                                                                        >  1:481482/1‑141 (MQ=255)                                                       tCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTAtt                                                                                       <  1:62335/141‑1 (MQ=255)                                                        cTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTAttt                                                                                      >  1:200898/1‑140 (MQ=255)                                                            cATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATCACTGCTTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATCTCGCAAAGTGACATTTCTAATTAAAGTGTATTGtcat                                                                                  <  1:572071/141‑1 (MQ=255)                                                               ctcATTCTCTCCTTTCAACTTAATACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAAAAATGTTATATCGCAAAGAGACATTTCTAATTAAAGTGTATTGTcatcat                                                                               >  2:28239/1‑141 (MQ=255)                                                                tcATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCAtt                                                                              <  2:321309/141‑1 (MQ=255)                                                                        tcCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATc                                                                      >  2:438647/1‑141 (MQ=255)                                                                          cTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCAt                                                                    >  2:426819/1‑141 (MQ=255)                                                                           tttCAACTTACTACTTCTTTTCTATTTTTTTTTTTTTTTTTTTTTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAACTGTATTGTCATCATTTCAattttttt                                                                   >  2:307263/1‑135 (MQ=255)                                                                           tttCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCAtt                                                                   >  1:365426/1‑141 (MQ=255)                                                                                 cTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGAATACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACAACTCTAATTAAAGTGTATTTTCATCATTTCAATATCATTCaaaaa                                                             >  2:579986/1‑141 (MQ=255)                                                                                   tactacTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACa                                                           >  1:387558/1‑141 (MQ=255)                                                                                    actactTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAg                                                          >  2:414734/1‑141 (MQ=255)                                                                                     ctactTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGc                                                         >  2:454723/1‑141 (MQ=255)                                                                                             tttCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACAt                                                                                                         >  2:632023/1‑85 (MQ=255)                                                                                             tttCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACAt                                                                                                         <  1:632023/85‑1 (MQ=255)                                                                                               tCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTTTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTg                                               >  2:63053/1‑141 (MQ=255)                                                                                               tCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTg                                               >  1:666342/1‑141 (MQ=255)                                                                                                cTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGt                                              <  2:464817/141‑1 (MQ=255)                                                                                                      ttATAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTTATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGc                                        >  2:588214/1‑141 (MQ=255)                                                                                                      ttAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGc                                        <  1:390040/141‑1 (MQ=255)                                                                                                           aaaaTGACTGATTACCTATAATTGTAAAATAAAAATACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAACTAAACCTTTGTCTCTGCTTCaa                                   >  2:343600/1‑141 (MQ=255)                                                                                                           aaaaTGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCaa                                   >  2:304376/1‑141 (MQ=255)                                                                                                            aaaTGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAAt                                  <  1:138919/141‑1 (MQ=255)                                                                                                            aaaTGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAAt                                  >  2:300161/1‑141 (MQ=255)                                                                                                             aaTGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAACGTGTATTGTCATCCTTTCAATATCTTTCAAAAACAGCTAAACCTTTGTCTCTGCTTCCAtt                                 <  2:540962/141‑1 (MQ=255)                                                                                                             aaTGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAAtt                                 >  1:275987/1‑141 (MQ=255)                                                                                                                    gATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGAc                                                                                                           >  1:440776/1‑60 (MQ=255)                                                                                                                    gATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGAc                                                                                                           <  2:440776/60‑1 (MQ=255)                                                                                                                     aTTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTATAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACaaaa                         >  1:325032/1‑141 (MQ=255)                                                                                                                       tACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTTAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAaat                       <  1:600198/141‑1 (MQ=255)                                                                                                                            ataATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTc                  <  1:562252/141‑1 (MQ=255)                                                                                                                            ataATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTc                  <  1:389295/141‑1 (MQ=255)                                                                                                                             taATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTcc                 >  2:509483/1‑141 (MQ=255)                                                                                                                              aaTTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTccc                <  2:387558/141‑1 (MQ=255)                                                                                                                                  gTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTg            <  1:256491/141‑1 (MQ=255)                                                                                                                                     aaataaaaACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGaaa         >  1:56052/1‑141 (MQ=255)                                                                                                                                       ataaaaACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGt       >  2:768758/1‑141 (MQ=255)                                                                                                                                          aaaaCACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTATc    <  1:768758/141‑1 (MQ=255)                                                                                                                                           aaaCACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTATCt   <  2:56052/141‑1 (MQ=255)                                                                                                                                            aaCACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTATCta  >  1:348494/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                            CACTGATACCAATGATTTCTACTATTTCCATGCATAGAATGTACAATAATTACATCTGTCATCTCATTCTCTCCTTTCAACTTACTACTTCTTTTCTATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTATCTA  >  CP000730/1963076‑1963355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.